AutismKB 2.0

Annotation Detail for NUBP1


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Basic Information Top
Gene Symbol:NUBP1 ( MGC117406,MGC130052,MGC130053,NBP,NBP1 )
Gene Full Name: nucleotide binding protein 1 (MinD homolog, E. coli)
Band: 16p13.13
Quick LinksEntrez ID:4682; OMIM: 600280; Uniprot ID:NUBP1_HUMAN; ENSEMBL ID: ENSG00000103274; HGNC ID: 8041
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult53 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor11 / 26384541
glioma7 / 10688365
head and neck tumor7 / 13630251
kidney tumor3 / 6895943
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma5 / 7175569
non-neoplasia3 / 9725030
normal62 / 336030718
ovarian tumor3 / 7668239
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer1 / 1026809
retinoblastoma3 / 4635664
skin tumor11 / 12494988
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood4 / 12347832
bone4 / 7165555
bone marrow0 / 488010 
brain16 / 110098914
cervix1 / 4817120
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye5 / 21105423
heart10 / 89626111
intestine6 / 23447225
kidney8 / 21177737
larynx1 / 2414541
liver2 / 2077439
lung16 / 33697447
lymph1 / 4427022
lymph node2 / 9161021
mammary gland5 / 15327132
mouth1 / 6705214
muscle2 / 10771518
nerve0 / 157680 
ovary3 / 10205129
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta14 / 28082549
prostate2 / 18934510
salivary gland2 / 2015599
skin16 / 21057475
spleen1 / 5395218
stomach3 / 9661931
testis4 / 33044212
thymus3 / 8113136
thyroid3 / 4747363
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203978_at
Cell line Expression level Expression bar
721_B_lymphoblasts25.95
Adipocyte5
AdrenalCortex5.05
Adrenalgland4.1
Amygdala5.05
Appendix4.85
AtrioventricularNode3.55
BDCA4+_DentriticCells13.8
Bonemarrow4.85
BronchialEpithelialCells4.8
CD105+_Endothelial4.9
CD14+_Monocytes32.4
CD19+_BCells(neg._sel.)12.6
CD33+_Myeloid6.3
CD34+6.3
CD4+_Tcells5.4
CD56+_NKCells6.3
CD71+_EarlyErythroid4.55
CD8+_Tcells5.1
CardiacMyocytes6.25
Caudatenucleus4.25
Cerebellum3.9
CerebellumPeduncles5.4
CiliaryGanglion3.4
CingulateCortex4.95
Colorectaladenocarcinoma5
DorsalRootGanglion3.65
FetalThyroid4.7
Fetalbrain4.8
Fetalliver4.1
Fetallung4.1
GlobusPallidus3.5
Heart23.4
Hypothalamus5.25
Kidney3.95
Leukemia_chronicMyelogenousK-5624.4
Leukemia_promyelocytic-HL-606.75
Leukemialymphoblastic(MOLT-4)3.9
Liver7.05
Lung7.8
Lymphnode4.15
Lymphoma_burkitts(Daudi)6.9
Lymphoma_burkitts(Raji)6.8
MedullaOblongata4.4
OccipitalLobe4.3
OlfactoryBulb3.95
Ovary3.15
Pancreas3.85
PancreaticIslet5.15
ParietalLobe5.1
Pituitary5.65
Placenta9.15
Pons4.6
PrefrontalCortex6.05
Prostate5.85
Salivarygland4
SkeletalMuscle5.7
Skin3.65
SmoothMuscle5.45
Spinalcord5.15
SubthalamicNucleus4.4
SuperiorCervicalGanglion5.45
TemporalLobe4.4
Testis4.55
TestisGermCell4.05
TestisIntersitial4
TestisLeydigCell4.7
TestisSeminiferousTubule4.1
Thalamus4.85
Thymus4.45
Thyroid6.15
Tongue4.65
Tonsil4.7
Trachea4.05
TrigeminalGanglion4.8
Uterus3.95
UterusCorpus4.3
WholeBlood7.75
Wholebrain3.85
colon4.85
pineal_day6.14
pineal_night6.66
retina5.875
small_intestine4.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P300255
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.24 ± 0.47
Basal Forebrain5.21 ± 0.22
Basal Part of Pons5.64 ± 0.39
Cerebellar Cortex5.57 ± 0.33
Cerebellar Nuclei5.58 ± 0.36
Claustrum5.24 ± 0.54
Epithalamus5.57 ± 0.27
Frontal Lobe5.42 ± 0.4
Globus Pallidus5.49 ± 0.36
Hypothalamus5.06 ± 0.86
Insula5.24 ± 0.31
Limbic Lobe5.3 ± 0.48
Mesencephalon5.28 ± 0.42
Myelencephalon5.31 ± 0.44
Occipital Lobe5.03 ± 0.39
Parietal Lobe5.32 ± 0.46
Pontine Tegmentum5.31 ± 0.44
Striatum5.17 ± 0.39
Subthalamus5.39 ± 0.31
Temporal Lobe5.31 ± 0.4
Thalamus5.27 ± 0.39
White Matter5.52 ± 0.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Nubp1CBCerebellum12.61
15.1
Nubp1CTXCerebral cortex33.69
25.32
Nubp1HIPHippocampal region17.78
17.39
Nubp1HPFHippocampal formation17.74
15.78
Nubp1HYHypothalamus13.04
9.64
Nubp1LSXLateral septal complex10.33
6.45
Nubp1MBMidbrain16.8
14.42
Nubp1MYMedulla21.78
22.79
Nubp1OLFOlfactory bulb27.77
21.43
Nubp1PPons19.08
19.26
Nubp1PALPallidum13.21
10.61
Nubp1RHPRetrohippocampal region18.61
14.12
Nubp1sAMYStriatum-like amygdalar nuclei14.91
10.14
Nubp1STRStriatum12.16
8.27
Nubp1STRdStriatum dorsal region10.88
7.32
Nubp1STRvStriatum ventral region16.15
11.09
Nubp1THThalamus14.02
10.68
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00004733 20 30 49 LCASGAGATPDTAIEEIKEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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