AutismKB 2.0

Annotation Detail for NCAM1


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Basic Information Top
Gene Symbol:NCAM1 ( CD56,MSK39,NCAM )
Gene Full Name: neural cell adhesion molecule 1
Band: 11q23.2
Quick LinksEntrez ID:4684; OMIM: 116930; Uniprot ID:NCAM1_HUMAN; ENSEMBL ID: ENSG00000149294; HGNC ID: 7656
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus357 / 564012632
neonate0 / 310970 
infant2 / 2362084
juvenile3 / 5555653
adult164 / 193912184
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor49 / 263845185
glioma22 / 106883205
head and neck tumor6 / 13630244
kidney tumor10 / 68959145
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia7 / 9725071
normal982 / 3360307292
ovarian tumor4 / 7668252
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone2 / 7165527
bone marrow0 / 488010 
brain915 / 1100989831
cervix0 / 481710 
connective tissue5 / 14925533
ear8 / 16212493
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye23 / 211054108
heart13 / 89626145
intestine4 / 23447217
kidney12 / 21177756
larynx3 / 24145124
liver3 / 20774314
lung22 / 33697465
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth3 / 6705244
muscle14 / 107715129
nerve4 / 15768253
ovary6 / 10205158
pancreas13 / 21481260
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta3 / 28082510
prostate7 / 18934536
salivary gland0 / 201550 
skin1 / 2105744
spleen3 / 5395255
stomach1 / 9661910
testis37 / 330442111
thymus3 / 8113136
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus37 / 232878158
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212843_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.05
Adipocyte5.9
AdrenalCortex170.55
Adrenalgland17.45
Amygdala435.35
Appendix14.8
AtrioventricularNode9.1
BDCA4+_DentriticCells5.15
Bonemarrow6.05
BronchialEpithelialCells5.85
CD105+_Endothelial5.75
CD14+_Monocytes6.25
CD19+_BCells(neg._sel.)6.15
CD33+_Myeloid7.4
CD34+5.6
CD4+_Tcells6.4
CD56+_NKCells532.5
CD71+_EarlyErythroid5.55
CD8+_Tcells5.45
CardiacMyocytes9.55
Caudatenucleus201.2
Cerebellum115.2
CerebellumPeduncles428.3
CiliaryGanglion28.05
CingulateCortex411.55
Colorectaladenocarcinoma6.35
DorsalRootGanglion59.15
FetalThyroid63.9
Fetalbrain2055.85
Fetalliver5.3
Fetallung5.05
GlobusPallidus244.85
Heart7.55
Hypothalamus998.6
Kidney3.5
Leukemia_chronicMyelogenousK-5625.5
Leukemia_promyelocytic-HL-605.25
Leukemialymphoblastic(MOLT-4)4.65
Liver8.1
Lung6.5
Lymphnode5
Lymphoma_burkitts(Daudi)6.55
Lymphoma_burkitts(Raji)8.65
MedullaOblongata278.5
OccipitalLobe620.75
OlfactoryBulb255.15
Ovary21.7
Pancreas4.85
PancreaticIslet19.15
ParietalLobe516.75
Pituitary47.6
Placenta6.05
Pons225
PrefrontalCortex902.4
Prostate7
Salivarygland6.4
SkeletalMuscle7.25
Skin12
SmoothMuscle6.8
Spinalcord203.4
SubthalamicNucleus286.25
SuperiorCervicalGanglion16.05
TemporalLobe234.7
Testis5.15
TestisGermCell11.35
TestisIntersitial5.1
TestisLeydigCell5.95
TestisSeminiferousTubule6.7
Thalamus266.05
Thymus4.6
Thyroid85
Tongue6.15
Tonsil5.85
Trachea4.95
TrigeminalGanglion32.8
Uterus129.85
UterusCorpus13.1
WholeBlood6.5
Wholebrain334.8
colon6.15
pineal_day735.72
pineal_night645.36
retina144.075
small_intestine18.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14689_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.65 ± 0.28
Basal Forebrain7.62 ± 0.13
Basal Part of Pons7.46 ± 0.35
Cerebellar Cortex7.45 ± 0.2
Cerebellar Nuclei7.35 ± 0.21
Claustrum8 ± 0.37
Epithalamus7.09 ± 0.65
Frontal Lobe7.42 ± 0.32
Globus Pallidus7.96 ± 0.21
Hypothalamus7.44 ± 0.21
Insula7.5 ± 0.22
Limbic Lobe7.65 ± 0.37
Mesencephalon7.58 ± 0.33
Myelencephalon7.53 ± 0.34
Occipital Lobe7.53 ± 0.37
Parietal Lobe7.46 ± 0.35
Pontine Tegmentum7.57 ± 0.32
Striatum7.62 ± 0.28
Subthalamus7.43 ± 0.23
Temporal Lobe7.51 ± 0.25
Thalamus7.46 ± 0.34
White Matter8.82 ± 0.25
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00044616 17 275 291 KVDKNDEAEYICIAENK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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