AutismKB 2.0

Annotation Detail for RERE


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Basic Information Top
Gene Symbol:RERE ( ARG,ARP,ATN1L,DNB1,FLJ38775,KIAA0458 )
Gene Full Name: arginine-glutamic acid dipeptide (RE) repeats
Band: 1p36.23
Quick LinksEntrez ID:473; OMIM: 605226; Uniprot ID:RERE_HUMAN; ENSEMBL ID: ENSG00000142599; HGNC ID: 9965
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst8 / 62319128
fetus45 / 56401279
neonate1 / 3109732
infant2 / 2362084
juvenile3 / 5555653
adult205 / 1939121105
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor4 / 34366116
chondrosarcoma8 / 8282396
colorectal tumor8 / 11424670
esophageal tumor1 / 1729057
gastrointestinal tumor7 / 11936958
germ cell tumor10 / 26384537
glioma21 / 106883196
head and neck tumor7 / 13630251
kidney tumor4 / 6895958
leukemia14 / 95842146
liver tumor3 / 9635931
lung tumor10 / 10312796
lymphoma8 / 71755111
non-neoplasia12 / 97250123
normal373 / 3360307111
ovarian tumor14 / 76682182
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer10 / 10268097
retinoblastoma3 / 4635664
skin tumor11 / 12494988
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites1 / 4001524
bladder1 / 2975733
blood11 / 12347889
bone9 / 71655125
bone marrow2 / 4880140
brain106 / 110098996
cervix7 / 48171145
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue24 / 215722111
esophagus1 / 2020949
eye38 / 211054180
heart12 / 89626133
intestine24 / 234472102
kidney17 / 21177780
larynx0 / 241450 
liver12 / 20774357
lung41 / 336974121
lymph6 / 44270135
lymph node45 / 91610491
mammary gland9 / 15327158
mouth3 / 6705244
muscle5 / 10771546
nerve4 / 15768253
ovary16 / 102051156
pancreas26 / 214812121
parathyroid7 / 20539340
pharynx4 / 4132896
pituitary gland1 / 1658560
placenta8 / 28082528
prostate17 / 18934589
salivary gland2 / 2015599
skin15 / 21057471
spleen1 / 5395218
stomach3 / 9661931
testis18 / 33044254
thymus6 / 8113173
thyroid5 / 47473105
tonsil3 / 16999176
trachea0 / 524130 
umbilical cord0 / 136800 
uterus20 / 23287885
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200938_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8
Adipocyte6.8
AdrenalCortex8.55
Adrenalgland6.1
Amygdala7.15
Appendix7.4
AtrioventricularNode6.85
BDCA4+_DentriticCells7
Bonemarrow10.1
BronchialEpithelialCells6.75
CD105+_Endothelial7.15
CD14+_Monocytes7.35
CD19+_BCells(neg._sel.)7.35
CD33+_Myeloid8.6
CD34+8.5
CD4+_Tcells8.2
CD56+_NKCells8
CD71+_EarlyErythroid6.85
CD8+_Tcells6.55
CardiacMyocytes12.35
Caudatenucleus6.45
Cerebellum5.85
CerebellumPeduncles9.5
CiliaryGanglion5.5
CingulateCortex7.8
Colorectaladenocarcinoma7.05
DorsalRootGanglion5.85
FetalThyroid6.95
Fetalbrain6.7
Fetalliver6.25
Fetallung5.25
GlobusPallidus5.4
Heart11.75
Hypothalamus7.7
Kidney7.95
Leukemia_chronicMyelogenousK-5626.3
Leukemia_promyelocytic-HL-606.25
Leukemialymphoblastic(MOLT-4)5.5
Liver10.15
Lung7.5
Lymphnode5.95
Lymphoma_burkitts(Daudi)9.2
Lymphoma_burkitts(Raji)10.75
MedullaOblongata6.3
OccipitalLobe6.6
OlfactoryBulb5.5
Ovary4.8
Pancreas5.75
PancreaticIslet7.9
ParietalLobe7.95
Pituitary8.15
Placenta6.95
Pons7.45
PrefrontalCortex8.7
Prostate7.95
Salivarygland6
SkeletalMuscle10.1
Skin5.65
SmoothMuscle8.05
Spinalcord7.6
SubthalamicNucleus7.05
SuperiorCervicalGanglion8.35
TemporalLobe7.45
Testis6
TestisGermCell5.75
TestisIntersitial5.9
TestisLeydigCell7.55
TestisSeminiferousTubule7.55
Thalamus7.45
Thymus4.9
Thyroid8.45
Tongue7.6
Tonsil7.2
Trachea5.95
TrigeminalGanglion9.25
Uterus5.45
UterusCorpus6.7
WholeBlood7.6
Wholebrain5.5
colon7
pineal_day8.58
pineal_night8.3
retina8.625
small_intestine6.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P85414
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.74 ± 0.23
Basal Forebrain6.35 ± 0.17
Basal Part of Pons6.36 ± 0.27
Cerebellar Cortex6.56 ± 0.36
Cerebellar Nuclei6.18 ± 0.33
Claustrum6.25 ± 0.48
Epithalamus6.24 ± 0.44
Frontal Lobe6.33 ± 0.32
Globus Pallidus6.07 ± 0.13
Hypothalamus6.31 ± 0.46
Insula6.49 ± 0.41
Limbic Lobe6.65 ± 0.33
Mesencephalon6.37 ± 0.38
Myelencephalon6.46 ± 0.37
Occipital Lobe6.82 ± 0.29
Parietal Lobe6.57 ± 0.31
Pontine Tegmentum6.45 ± 0.32
Striatum6.15 ± 0.3
Subthalamus6.4 ± 0.19
Temporal Lobe6.45 ± 0.36
Thalamus6.4 ± 0.31
White Matter6.39 ± 0.08
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
RereCBCerebellum86.19
100
RereCTXCerebral cortex100
100
RereHIPHippocampal region100
100
RereHPFHippocampal formation100
100
RereHYHypothalamus100
100
RereLSXLateral septal complex99.07
77.02
RereMBMidbrain100
100
RereMYMedulla88.39
100
RereOLFOlfactory bulb100
99.92
RerePPons88.77
100
RerePALPallidum77.34
77.8
RereRHPRetrohippocampal region100
100
ReresAMYStriatum-like amygdalar nuclei100
100
RereSTRStriatum65.37
51.99
RereSTRdStriatum dorsal region52.74
41.44
RereSTRvStriatum ventral region79.42
61.35
RereTHThalamus92.23
90.65
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00517135 25 49 73 NYAESDHSEDEDNDNNSATAEESTK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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