Annotation Detail for NEO1
Basic Information Top
| Gene Symbol: | NEO1 ( DKFZp547A066,DKFZp547B146,IGDCC2,NGN ) |
|---|---|
| Gene Full Name: | neogenin 1 |
| Band: | 15q24.1 |
| Quick Links | Entrez ID:4756; OMIM: 601907; Uniprot ID:NEO1_HUMAN; ENSEMBL ID: ENSG00000067141; HGNC ID: 7754 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.388613
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 42 / 564012 | 74 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 131 / 1939121 | 67 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 26 / 114246 | 227 |  |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 190 / 3360307 | 56 | |
| ovarian tumor | 15 / 76682 | 195 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 52 / 1100989 | 47 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 11 / 211054 | 52 | |
| heart | 3 / 89626 | 33 | |
| intestine | 41 / 234472 | 174 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 2 / 24145 | 82 | |
| liver | 0 / 207743 | 0 | |
| lung | 31 / 336974 | 91 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 17 / 102051 | 166 | |
| pancreas | 17 / 214812 | 79 | |
| parathyroid | 8 / 20539 | 389 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 25 / 189345 | 132 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 17 / 330442 | 51 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204321_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.6 | |
| Adipocyte | 3.7 | |
| AdrenalCortex | 3.85 | |
| Adrenalgland | 3.15 | |
| Amygdala | 4.65 | |
| Appendix | 5.05 | |
| AtrioventricularNode | 2.85 | |
| BDCA4+_DentriticCells | 4.05 | |
| Bonemarrow | 3.65 | |
| BronchialEpithelialCells | 3.65 | |
| CD105+_Endothelial | 3.8 | |
| CD14+_Monocytes | 3.9 | |
| CD19+_BCells(neg._sel.) | 3.95 | |
| CD33+_Myeloid | 4.75 | |
| CD34+ | 4.7 | |
| CD4+_Tcells | 4.15 | |
| CD56+_NKCells | 4.45 | |
| CD71+_EarlyErythroid | 3.5 | |
| CD8+_Tcells | 3.6 | |
| CardiacMyocytes | 4.65 | |
| Caudatenucleus | 3.5 | |
| Cerebellum | 5.55 | |
| CerebellumPeduncles | 4.2 | |
| CiliaryGanglion | 2.55 | |
| CingulateCortex | 3.75 | |
| Colorectaladenocarcinoma | 3.75 | |
| DorsalRootGanglion | 2.85 | |
| FetalThyroid | 5.5 | |
| Fetalbrain | 11.65 | |
| Fetalliver | 3.25 | |
| Fetallung | 5.4 | |
| GlobusPallidus | 2.7 | |
| Heart | 4.65 | |
| Hypothalamus | 4.55 | |
| Kidney | 3.05 | |
| Leukemia_chronicMyelogenousK-562 | 3.35 | |
| Leukemia_promyelocytic-HL-60 | 3.3 | |
| Leukemialymphoblastic(MOLT-4) | 3 | |
| Liver | 4.9 | |
| Lung | 5.55 | |
| Lymphnode | 3.15 | |
| Lymphoma_burkitts(Daudi) | 4.75 | |
| Lymphoma_burkitts(Raji) | 5.2 | |
| MedullaOblongata | 5.2 | |
| OccipitalLobe | 3.35 | |
| OlfactoryBulb | 2.95 | |
| Ovary | 2.45 | |
| Pancreas | 2.95 | |
| PancreaticIslet | 6.15 | |
| ParietalLobe | 3.95 | |
| Pituitary | 4.35 | |
| Placenta | 4 | |
| Pons | 4.25 | |
| PrefrontalCortex | 4.8 | |
| Prostate | 11.25 | |
| Salivarygland | 3 | |
| SkeletalMuscle | 4.15 | |
| Skin | 2.9 | |
| SmoothMuscle | 4.25 | |
| Spinalcord | 4.05 | |
| SubthalamicNucleus | 3.4 | |
| SuperiorCervicalGanglion | 6.95 | |
| TemporalLobe | 3.4 | |
| Testis | 7.35 | |
| TestisGermCell | 8.25 | |
| TestisIntersitial | 3.3 | |
| TestisLeydigCell | 3.95 | |
| TestisSeminiferousTubule | 3.3 | |
| Thalamus | 3.8 | |
| Thymus | 2.9 | |
| Thyroid | 4.8 | |
| Tongue | 3.6 | |
| Tonsil | 3.6 | |
| Trachea | 3.1 | |
| TrigeminalGanglion | 3.95 | |
| Uterus | 4.15 | |
| UterusCorpus | 3.3 | |
| WholeBlood | 4.05 | |
| Wholebrain | 5.8 | |
| colon | 15.75 | |
| pineal_day | 7.94 | |
| pineal_night | 11.34 | |
| retina | 7.85 | |
| small_intestine | 4.8 | |
- Probe name: CUST_9569_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.12 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.13 ± 0.24 | |
| Basal Part of Pons | 7.81 ± 0.28 | |
| Cerebellar Cortex | 7.93 ± 0.21 | |
| Cerebellar Nuclei | 8.21 ± 0.46 | |
| Claustrum | 8.17 ± 0.57 | |
| Epithalamus | 8.2 ± 0.23 | |
| Frontal Lobe | 8.04 ± 0.4 | |
| Globus Pallidus | 9.05 ± 0.23 | |
| Hypothalamus | 7.81 ± 0.24 | |
| Insula | 7.88 ± 0.26 | |
| Limbic Lobe | 8.23 ± 0.41 | |
| Mesencephalon | 8.2 ± 0.31 | |
| Myelencephalon | 8.17 ± 0.4 | |
| Occipital Lobe | 8.36 ± 0.42 | |
| Parietal Lobe | 8.21 ± 0.31 | |
| Pontine Tegmentum | 8.25 ± 0.36 | |
| Striatum | 8.37 ± 0.41 | |
| Subthalamus | 7.86 ± 0.22 | |
| Temporal Lobe | 7.98 ± 0.29 | |
| Thalamus | 8.33 ± 0.28 | |
| White Matter | 9.76 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Neo1 | CB | Cerebellum | 53.87 | |
| 61.38 | | |||
| Neo1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Neo1 | HIP | Hippocampal region | 88.58 | |
| 100 | | |||
| Neo1 | HPF | Hippocampal formation | 92.21 | |
| 100 | | |||
| Neo1 | HY | Hypothalamus | 76.4 | |
| 67.07 | | |||
| Neo1 | LSX | Lateral septal complex | 70.29 | |
| 53.39 | | |||
| Neo1 | MB | Midbrain | 76.73 | |
| 66.01 | | |||
| Neo1 | MY | Medulla | 78.81 | |
| 72.44 | | |||
| Neo1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Neo1 | P | Pons | 70.61 | |
| 63.07 | | |||
| Neo1 | PAL | Pallidum | 78.83 | |
| 72.67 | | |||
| Neo1 | RHP | Retrohippocampal region | 100 | |
| 87.96 | | |||
| Neo1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 85.37 | | |||
| Neo1 | STR | Striatum | 76.99 | |
| 58.57 | | |||
| Neo1 | STRd | Striatum dorsal region | 68.45 | |
| 50.71 | | |||
| Neo1 | STRv | Striatum ventral region | 96.94 | |
| 73.36 | | |||
| Neo1 | TH | Thalamus | 100 | |
| 85.85 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00134024 | 20 | 1408 | 1427 | SRPPMPVVVPSAPEVQETTR | Peptide Atlas |