AutismKB 2.0

Annotation Detail for NFIA


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Basic Information Top
Gene Symbol:NFIA ( DKFZp434L0422,DKFZp686J23256,FLJ39164,KIAA1439,NFI-L )
Gene Full Name: nuclear factor I/A
Band: 1p31.3
Quick LinksEntrez ID:4774; OMIM: 600727; Uniprot ID:NFIA_HUMAN; ENSEMBL ID: ENSG00000162599; HGNC ID: 7784
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus70 / 564012124
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult103 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor3 / 26384511
glioma1 / 1068839
head and neck tumor7 / 13630251
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal244 / 336030772
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma4 / 4635686
skin tumor3 / 12494924
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites1 / 4001524
bladder1 / 2975733
blood1 / 1234788
bone3 / 7165541
bone marrow0 / 488010 
brain63 / 110098957
cervix2 / 4817141
connective tissue5 / 14925533
ear3 / 16212185
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye11 / 21105452
heart13 / 89626145
intestine10 / 23447242
kidney9 / 21177742
larynx3 / 24145124
liver6 / 20774328
lung25 / 33697474
lymph0 / 442700 
lymph node2 / 9161021
mammary gland3 / 15327119
mouth3 / 6705244
muscle5 / 10771546
nerve1 / 1576863
ovary5 / 10205148
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland2 / 16585120
placenta9 / 28082532
prostate11 / 18934558
salivary gland0 / 201550 
skin6 / 21057428
spleen4 / 5395274
stomach3 / 9661931
testis14 / 33044242
thymus5 / 8113161
thyroid14 / 47473294
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus17 / 23287872
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 704_at
Cell line Expression level Expression bar
Pr1T10.202
Pr4T10.699
Pr5T9.517
Pr7T10.177
Pr1N10.719
Pr5N10.512
Pr6T12.544
Pr3N9.961
Pr3T10.792
Pr4N10.231
Pr2N9.584
Pr8N11.178
Pr8T11.375
Pr9N10.513
Pr10N10.836
Pr10T10.964
Pr9T10.818
Pr11T10.02
Pr12T10.025
Pr13AT10.811
Pr13BT10.409
Pr21T10.45
Pr22T10.76
Pr30T12.276
Pr23T11.932
Pr19T11.014
Pr26T10.833
Pr31T10.394
Pr16T11.288
Pr17T11.007
Pr24T10.203
Pr27T9.525
Pr29T10.628
OVR10212.329
HUOVR10.366
G212.296
G311.658
G510.59
G611.084
G810.613
G910.682
CO7T12.23
CO8T10.595
CO15T13.273
CO27T14.841
CO30T12.517
CO32T11.246
CO40T11.17
CO52N14.541
CO62N14.369
K110.086
K29.965
K310.503
K411.024
K14N13.663
K1611.509
K1713.41
K1911.672
K2011.285
K2210.503
CO9T11.2
CO20T13.157
CO24T12.402
CO36N13.331
K1810.434
P1N10.036
P2N11.758
P5N12.408
P810.496
P118.157
P1711.1
K2111.687
K25N12.584
K28N13.437
CO42T11.907
P228.918
P13N10.246
LU11T10.929
LU16T12.072
LU7T10.553
LU8T10.746
LU12T11.206
LU13T12.087
LU5T12.164
LU6T13.467
LU14T11.657
LU17T11.996
LU50N10.78
LU52N11.68
LU18T11.496
LU55N11.976
LU3N14.469
P16B14.072
P2313.787
OVR1610.975
OVR1910.026
OVR2710.594
OVR2811.104
OVR278E12.597
OVR210.944
OVR510.318
OVR811.69
OVR1111.46
OVR1211.153
OVR1310.26
OVR2211.905
OVR2611.922
OVR1012.992
OVR278S14.527
OVR110.908
LU19T10.716
LU20T10.984
LU24T11.498
LU25T11.546
LU31T14.301
LU34T12.301
LU39T9.644
CO14T11.938
CO21T13.46
CO23T12.327
CO41N10.861
LU40T13
LU41T10.403
LU44T11.397
LU46T11.246
LU49T11.06
L5N12.105
LU42T11.517
LU30T12.058
LU43T14.293
CO5T12.024
CO44T10.595
CO49T11.679
CO51T11.986
CO56T10.938
CO61T10.864
LU26T12.541
LU33T13.439
LU36T10.957
CO43T12.069
G1812.245
G4610.714
L11T13.591
L13N14.209
L30T12.741
L31T13.064
L32T13.292
L34T13.474
L35T14.28
B1N14.176
B5N15.078
B8T11.764
B10T11.597
B14T13.795
B16T11.69
B17T11.608
B1NR12.804
B20T14.783
B51NR13.236
B6T14.992
B15T16.14
B21T17.218
B29T11.847
B31T13.398
B32T13.952
B24T11.232
B46T11.325
B34T12.226
B36T11.872
B37T12.558
B38T12.395
B39T10.774
X10211.904
X116_0211.707
G28010.717
X4610.225
X5814.229
G18612.3
G29611.392
L38T11.525
L31T.211.011
L26N12.578
N257ANTR12.061
N285BODY10.478
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P155030
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.68 ± 0.27
Basal Forebrain10.87 ± 0.37
Basal Part of Pons9.83 ± 0.26
Cerebellar Cortex10.88 ± 0.25
Cerebellar Nuclei10.1 ± 0.31
Claustrum10.53 ± 0.36
Epithalamus11.07 ± 0.4
Frontal Lobe10.32 ± 0.44
Globus Pallidus11.33 ± 0.69
Hypothalamus10.46 ± 0.21
Insula10.3 ± 0.28
Limbic Lobe10.35 ± 0.58
Mesencephalon10.74 ± 0.42
Myelencephalon10.54 ± 0.5
Occipital Lobe10.61 ± 0.53
Parietal Lobe10.34 ± 0.43
Pontine Tegmentum10.47 ± 0.41
Striatum10.68 ± 0.61
Subthalamus9.99 ± 0.32
Temporal Lobe10.2 ± 0.33
Thalamus10.54 ± 0.27
White Matter11.2 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
NfiaCBCerebellum35.09
20.45
NfiaCTXCerebral cortex7.47
4.72
NfiaHIPHippocampal region35.12
34.8
NfiaHPFHippocampal formation24.27
21.35
NfiaHYHypothalamus1.58
1.09
NfiaLSXLateral septal complex11.75
9.52
NfiaMBMidbrain2.29
1.81
NfiaMYMedulla5.29
4.78
NfiaOLFOlfactory bulb24
14.97
NfiaPPons3.68
4.1
NfiaPALPallidum0.98
0.76
NfiaRHPRetrohippocampal region6.53
4.29
NfiasAMYStriatum-like amygdalar nuclei3.48
2.06
NfiaSTRStriatum4.56
4.27
NfiaSTRdStriatum dorsal region3.12
3.48
NfiaSTRvStriatum ventral region4
2.64
NfiaTHThalamus2.34
1.62
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00027864 21 176 196 SPQCSNPGLCVQPHHIGVSVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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