AutismKB 2.0

Annotation Detail for NID1


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Basic Information Top
Gene Symbol:NID1 ( NID )
Gene Full Name: nidogen 1
Band: 1q42.3
Quick LinksEntrez ID:4811; OMIM: 131390; Uniprot ID:NID1_HUMAN; ENSEMBL ID: ENSG00000116962; HGNC ID: 7821
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst2 / 6231932
fetus99 / 564012175
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult133 / 193912168
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma10 / 82823120
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor4 / 26384515
glioma13 / 106883121
head and neck tumor8 / 13630258
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal261 / 336030777
ovarian tumor0 / 766820 
pancreatic tumor90 / 104616860
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder3 / 29757100
blood2 / 12347816
bone10 / 71655139
bone marrow1 / 4880120
brain32 / 110098929
cervix1 / 4817120
connective tissue7 / 14925546
ear11 / 16212678
embryonic tissue19 / 21572288
esophagus1 / 2020949
eye17 / 21105480
heart25 / 89626278
intestine4 / 23447217
kidney8 / 21177737
larynx4 / 24145165
liver10 / 20774348
lung27 / 33697480
lymph0 / 442700 
lymph node1 / 9161010
mammary gland5 / 15327132
mouth0 / 670520 
muscle8 / 10771574
nerve4 / 15768253
ovary0 / 1020510 
pancreas94 / 214812437
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta47 / 280825167
prostate4 / 18934521
salivary gland0 / 201550 
skin11 / 21057452
spleen6 / 53952111
stomach5 / 9661951
testis5 / 33044215
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus32 / 232878137
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202007_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.1
Adipocyte1004.7
AdrenalCortex10.3
Adrenalgland45.45
Amygdala7.25
Appendix26.7
AtrioventricularNode10.7
BDCA4+_DentriticCells8.05
Bonemarrow8.25
BronchialEpithelialCells7.15
CD105+_Endothelial9.4
CD14+_Monocytes16.05
CD19+_BCells(neg._sel.)7.5
CD33+_Myeloid11.3
CD34+9.2
CD4+_Tcells7.45
CD56+_NKCells8.4
CD71+_EarlyErythroid7.05
CD8+_Tcells6.35
CardiacMyocytes28.35
Caudatenucleus6.5
Cerebellum6.1
CerebellumPeduncles8.95
CiliaryGanglion6.85
CingulateCortex7.8
Colorectaladenocarcinoma7.4
DorsalRootGanglion7.15
FetalThyroid42.7
Fetalbrain8.05
Fetalliver215.55
Fetallung443.35
GlobusPallidus5.95
Heart13.2
Hypothalamus7.8
Kidney7.5
Leukemia_chronicMyelogenousK-5626.6
Leukemia_promyelocytic-HL-606.45
Leukemialymphoblastic(MOLT-4)5.7
Liver102.8
Lung67.25
Lymphnode17.5
Lymphoma_burkitts(Daudi)9.7
Lymphoma_burkitts(Raji)11.15
MedullaOblongata6.7
OccipitalLobe6.45
OlfactoryBulb58.25
Ovary139.55
Pancreas6.95
PancreaticIslet10.3
ParietalLobe8.35
Pituitary8.6
Placenta638.2
Pons7.5
PrefrontalCortex8.8
Prostate11.2
Salivarygland6.5
SkeletalMuscle11.55
Skin7.65
SmoothMuscle439.2
Spinalcord7.95
SubthalamicNucleus7.1
SuperiorCervicalGanglion13.2
TemporalLobe7
Testis6.65
TestisGermCell16.4
TestisIntersitial6.35
TestisLeydigCell7.8
TestisSeminiferousTubule6.6
Thalamus7.65
Thymus11.95
Thyroid11.25
Tongue8.3
Tonsil7.25
Trachea6.45
TrigeminalGanglion8.65
Uterus390.75
UterusCorpus7.55
WholeBlood8.35
Wholebrain5.75
colon55
pineal_day9.16
pineal_night12.58
retina127.7
small_intestine325.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1402_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.66 ± 0.81
Basal Forebrain2.29 ± 0.65
Basal Part of Pons2.05 ± 0.36
Cerebellar Cortex2.22 ± 0.77
Cerebellar Nuclei2.57 ± 0.85
Claustrum3.06 ± 0.94
Epithalamus2.12 ± 1.15
Frontal Lobe2.17 ± 0.68
Globus Pallidus3.26 ± 0.81
Hypothalamus2.51 ± 0.85
Insula2.31 ± 0.58
Limbic Lobe2.27 ± 0.69
Mesencephalon2.72 ± 0.84
Myelencephalon2.41 ± 0.75
Occipital Lobe2.37 ± 0.64
Parietal Lobe2.34 ± 0.7
Pontine Tegmentum2.36 ± 0.57
Striatum2.92 ± 0.7
Subthalamus2.45 ± 0.8
Temporal Lobe2.27 ± 0.77
Thalamus2.49 ± 0.58
White Matter3.3 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Nid1CBCerebellum2.07
3.02
Nid1CTXCerebral cortex0.47
0.58
Nid1HIPHippocampal region0.36
0.65
Nid1HPFHippocampal formation0.48
0.69
Nid1HYHypothalamus0.4
0.3
Nid1LSXLateral septal complex0.19
0.19
Nid1MBMidbrain0.94
1.07
Nid1MYMedulla1.02
0.96
Nid1OLFOlfactory bulb0.58
1.08
Nid1PPons1.34
1.59
Nid1PALPallidum0.47
0.37
Nid1RHPRetrohippocampal region0.5
0.48
Nid1sAMYStriatum-like amygdalar nuclei0.9
0.68
Nid1STRStriatum0.35
0.33
Nid1STRdStriatum dorsal region0.28
0.32
Nid1STRvStriatum ventral region0.22
0.15
Nid1THThalamus0.48
0.67
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00027223 17 758 774 PINYCETGLHNCDIPQR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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