AutismKB 2.0

Annotation Detail for NINJ1


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Basic Information Top
Gene Symbol:NINJ1 ( NIN1,NINJURIN )
Gene Full Name: ninjurin 1
Band: 9q22.31
Quick LinksEntrez ID:4814; OMIM: 602062; Uniprot ID:NINJ1_HUMAN; ENSEMBL ID: ENSG00000131669; HGNC ID: 7824
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus8 / 56401214
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult112 / 193912157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma14 / 82823169
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor7 / 26384526
glioma11 / 106883102
head and neck tumor7 / 13630251
kidney tumor5 / 6895972
leukemia1 / 9584210
liver tumor22 / 96359228
lung tumor13 / 103127126
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal99 / 336030729
ovarian tumor3 / 7668239
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer11 / 102680107
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone3 / 7165541
bone marrow0 / 488010 
brain22 / 110098919
cervix2 / 4817141
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye10 / 21105447
heart1 / 8962611
intestine8 / 23447234
kidney16 / 21177775
larynx0 / 241450 
liver25 / 207743120
lung28 / 33697483
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary6 / 10205158
pancreas10 / 21481246
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta18 / 28082564
prostate22 / 189345116
salivary gland3 / 20155148
skin6 / 21057428
spleen4 / 5395274
stomach0 / 966190 
testis13 / 33044239
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203045_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.55
Adipocyte6.15
AdrenalCortex12.45
Adrenalgland9.9
Amygdala6.2
Appendix5.35
AtrioventricularNode3.95
BDCA4+_DentriticCells5.9
Bonemarrow5.3
BronchialEpithelialCells6.55
CD105+_Endothelial5.55
CD14+_Monocytes61.25
CD19+_BCells(neg._sel.)5.35
CD33+_Myeloid21.05
CD34+6.7
CD4+_Tcells6.15
CD56+_NKCells6.7
CD71+_EarlyErythroid4.9
CD8+_Tcells5.3
CardiacMyocytes6.65
Caudatenucleus4.75
Cerebellum4.3
CerebellumPeduncles6.05
CiliaryGanglion3.75
CingulateCortex5.4
Colorectaladenocarcinoma8.9
DorsalRootGanglion4
FetalThyroid6.45
Fetalbrain5.35
Fetalliver4.65
Fetallung9.65
GlobusPallidus3.9
Heart38.5
Hypothalamus7
Kidney7.5
Leukemia_chronicMyelogenousK-5624.85
Leukemia_promyelocytic-HL-604.65
Leukemialymphoblastic(MOLT-4)4.35
Liver17.8
Lung22.2
Lymphnode6.9
Lymphoma_burkitts(Daudi)6.7
Lymphoma_burkitts(Raji)7.3
MedullaOblongata4.85
OccipitalLobe4.8
OlfactoryBulb4.75
Ovary3.55
Pancreas4.25
PancreaticIslet6.95
ParietalLobe5.6
Pituitary7
Placenta19.6
Pons5.05
PrefrontalCortex6.9
Prostate13.6
Salivarygland4.2
SkeletalMuscle5.8
Skin4.05
SmoothMuscle6.2
Spinalcord7.55
SubthalamicNucleus4.85
SuperiorCervicalGanglion5.95
TemporalLobe4.85
Testis5.05
TestisGermCell8.85
TestisIntersitial4.5
TestisLeydigCell5.2
TestisSeminiferousTubule4.65
Thalamus5.4
Thymus6.5
Thyroid24
Tongue5.2
Tonsil5.2
Trachea4.5
TrigeminalGanglion5.7
Uterus8.25
UterusCorpus4.8
WholeBlood125.3
Wholebrain4.9
colon5.4
pineal_day7.04
pineal_night6.94
retina12.05
small_intestine5.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7246_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.45 ± 0.53
Basal Forebrain5.59 ± 0.48
Basal Part of Pons5.78 ± 0.86
Cerebellar Cortex5.53 ± 0.59
Cerebellar Nuclei5.39 ± 0.52
Claustrum4.39 ± 0.93
Epithalamus6.43 ± 0.77
Frontal Lobe5.76 ± 0.65
Globus Pallidus6.36 ± 0.58
Hypothalamus6.03 ± 0.62
Insula5.69 ± 0.46
Limbic Lobe5.02 ± 0.78
Mesencephalon5.79 ± 0.71
Myelencephalon5.72 ± 0.66
Occipital Lobe5.52 ± 0.64
Parietal Lobe5.68 ± 0.71
Pontine Tegmentum5.59 ± 0.63
Striatum5.64 ± 0.49
Subthalamus5.82 ± 0.37
Temporal Lobe5.76 ± 0.59
Thalamus5.97 ± 0.58
White Matter3.84 ± 0.51
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ninj1CBCerebellum6.15
6.81
Ninj1CTXCerebral cortex1.7
1.5
Ninj1HIPHippocampal region2.79
2.88
Ninj1HPFHippocampal formation2.32
2.24
Ninj1HYHypothalamus0.59
0.6
Ninj1LSXLateral septal complex0.79
1.32
Ninj1MBMidbrain1.23
1.44
Ninj1MYMedulla6.71
8.27
Ninj1OLFOlfactory bulb1.72
1.77
Ninj1PPons3.33
4.89
Ninj1PALPallidum1.61
1.71
Ninj1RHPRetrohippocampal region1.71
1.48
Ninj1sAMYStriatum-like amygdalar nuclei1.59
1.33
Ninj1STRStriatum1.59
1.36
Ninj1STRdStriatum dorsal region1.82
1.55
Ninj1STRvStriatum ventral region1.04
0.74
Ninj1THThalamus1.5
1.38
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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