Annotation Detail for NOVA1
Basic Information Top
| Gene Symbol: | NOVA1 ( Nova-1 ) |
|---|---|
| Gene Full Name: | neuro-oncological ventral antigen 1 |
| Band: | 14q12 |
| Quick Links | Entrez ID:4857; OMIM: 602157; Uniprot ID:NOVA1_HUMAN; ENSEMBL ID: ENSG00000139910; HGNC ID: 7886 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.31588
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 22 / 564012 | 39 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 17 / 94178 | 180 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 15 / 106883 | 140 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 89 / 3360307 | 26 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 |  |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 73 / 1100989 | 66 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 17 / 153271 | 110 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205794_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.65 | |
| Adipocyte | 4.95 | |
| AdrenalCortex | 5.05 | |
| Adrenalgland | 4.05 | |
| Amygdala | 74.4 | |
| Appendix | 5.2 | |
| AtrioventricularNode | 4.05 | |
| BDCA4+_DentriticCells | 5.05 | |
| Bonemarrow | 4.7 | |
| BronchialEpithelialCells | 4.6 | |
| CD105+_Endothelial | 4.65 | |
| CD14+_Monocytes | 4.9 | |
| CD19+_BCells(neg._sel.) | 4.9 | |
| CD33+_Myeloid | 5.85 | |
| CD34+ | 5.8 | |
| CD4+_Tcells | 4.9 | |
| CD56+_NKCells | 5.7 | |
| CD71+_EarlyErythroid | 4.45 | |
| CD8+_Tcells | 4.4 | |
| CardiacMyocytes | 6.15 | |
| Caudatenucleus | 32.15 | |
| Cerebellum | 301.5 |  |
| CerebellumPeduncles | 164.7 | |
| CiliaryGanglion | 3.7 | |
| CingulateCortex | 42.05 | |
| Colorectaladenocarcinoma | 4.9 | |
| DorsalRootGanglion | 3.85 | |
| FetalThyroid | 4.75 | |
| Fetalbrain | 64.8 | |
| Fetalliver | 4.2 | |
| Fetallung | 3.95 | |
| GlobusPallidus | 39.05 | |
| Heart | 6.25 | |
| Hypothalamus | 114 | |
| Kidney | 4 | |
| Leukemia_chronicMyelogenousK-562 | 4.2 | |
| Leukemia_promyelocytic-HL-60 | 4.1 | |
| Leukemialymphoblastic(MOLT-4) | 3.95 | |
| Liver | 6.55 | |
| Lung | 5.35 | |
| Lymphnode | 4.4 | |
| Lymphoma_burkitts(Daudi) | 6.15 | |
| Lymphoma_burkitts(Raji) | 6.8 | |
| MedullaOblongata | 68.9 | |
| OccipitalLobe | 108.5 | |
| OlfactoryBulb | 3.95 | |
| Ovary | 3.3 | |
| Pancreas | 3.8 | |
| PancreaticIslet | 5.05 | |
| ParietalLobe | 42.1 | |
| Pituitary | 31.1 | |
| Placenta | 4.9 | |
| Pons | 44.75 | |
| PrefrontalCortex | 113.6 | |
| Prostate | 5.7 | |
| Salivarygland | 3.9 | |
| SkeletalMuscle | 6.15 | |
| Skin | 4.3 | |
| SmoothMuscle | 5.4 | |
| Spinalcord | 32.5 | |
| SubthalamicNucleus | 33.3 | |
| SuperiorCervicalGanglion | 6.4 | |
| TemporalLobe | 33.9 | |
| Testis | 4.3 | |
| TestisGermCell | 4.1 | |
| TestisIntersitial | 4.05 | |
| TestisLeydigCell | 4.9 | |
| TestisSeminiferousTubule | 4.15 | |
| Thalamus | 44.85 | |
| Thymus | 3.85 | |
| Thyroid | 6.3 | |
| Tongue | 4.9 | |
| Tonsil | 4.7 | |
| Trachea | 4.1 | |
| TrigeminalGanglion | 5.5 | |
| Uterus | 15.15 | |
| UterusCorpus | 4.4 | |
| WholeBlood | 5.05 | |
| Wholebrain | 136.3 | |
| colon | 14.95 | |
| pineal_day | 6.38 | |
| pineal_night | 8.72 | |
| retina | 24.375 | |
| small_intestine | 4.75 | |
- Probe name: CUST_10340_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.43 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.49 ± 0.17 | |
| Basal Part of Pons | 9.05 ± 0.18 | |
| Cerebellar Cortex | 9.73 ± 0.18 | |
| Cerebellar Nuclei | 9.84 ± 0.21 | |
| Claustrum | 9.29 ± 0.26 | |
| Epithalamus | 9.21 ± 0.4 | |
| Frontal Lobe | 9.26 ± 0.38 | |
| Globus Pallidus | 8.99 ± 0.15 | |
| Hypothalamus | 9.44 ± 0.75 | |
| Insula | 9.25 ± 0.31 | |
| Limbic Lobe | 9.21 ± 0.34 | |
| Mesencephalon | 9.43 ± 0.4 | |
| Myelencephalon | 9.3 ± 0.37 | |
| Occipital Lobe | 9.57 ± 0.31 | |
| Parietal Lobe | 9.51 ± 0.29 | |
| Pontine Tegmentum | 9.47 ± 0.3 | |
| Striatum | 9.06 ± 0.27 | |
| Subthalamus | 9.97 ± 0.24 | |
| Temporal Lobe | 9.24 ± 0.31 | |
| Thalamus | 9.15 ± 0.25 | |
| White Matter | 9.55 ± 0.21 | |
Mouse Brain ISH 