Annotation Detail for NRCAM
Basic Information Top
| Gene Symbol: | NRCAM ( KIAA0343,MGC138845,MGC138846 ) |
|---|---|
| Gene Full Name: | neuronal cell adhesion molecule |
| Band: | 7q31.1 |
| Quick Links | Entrez ID:4897; OMIM: 601581; Uniprot ID:NRCAM_HUMAN; ENSEMBL ID: ENSG00000091129; HGNC ID: 7994 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.21422
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 30 / 564012 | 53 |  |
| neonate | 2 / 31097 | 64 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 65 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 18 / 106883 | 168 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 204 / 3360307 | 60 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 162 / 1100989 | 147 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 13 / 211054 | 61 | |
| heart | 2 / 89626 | 22 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 4 / 51780 | 77 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 216959_x_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.3 | |
| Adipocyte | 5.25 | |
| AdrenalCortex | 4.6 | |
| Adrenalgland | 3.7 | |
| Amygdala | 5.65 | |
| Appendix | 4.45 | |
| AtrioventricularNode | 4.85 | |
| BDCA4+_DentriticCells | 4.7 | |
| Bonemarrow | 4.4 | |
| BronchialEpithelialCells | 4.25 | |
| CD105+_Endothelial | 4.45 | |
| CD14+_Monocytes | 4.55 | |
| CD19+_BCells(neg._sel.) | 4.6 | |
| CD33+_Myeloid | 5.65 | |
| CD34+ | 5.55 | |
| CD4+_Tcells | 4.85 | |
| CD56+_NKCells | 5.1 | |
| CD71+_EarlyErythroid | 4.1 | |
| CD8+_Tcells | 4.2 | |
| CardiacMyocytes | 5.65 | |
| Caudatenucleus | 3.95 | |
| Cerebellum | 3.55 | |
| CerebellumPeduncles | 5.5 | |
| CiliaryGanglion | 3.15 | |
| CingulateCortex | 4.5 | |
| Colorectaladenocarcinoma | 4.35 | |
| DorsalRootGanglion | 3.75 | |
| FetalThyroid | 4.2 | |
| Fetalbrain | 5 | |
| Fetalliver | 3.8 | |
| Fetallung | 3.65 | |
| GlobusPallidus | 4.7 | |
| Heart | 5.6 | |
| Hypothalamus | 5.15 | |
| Kidney | 3.55 | |
| Leukemia_chronicMyelogenousK-562 | 4 | |
| Leukemia_promyelocytic-HL-60 | 3.9 | |
| Leukemialymphoblastic(MOLT-4) | 3.55 | |
| Liver | 5.8 | |
| Lung | 4.8 | |
| Lymphnode | 3.75 | |
| Lymphoma_burkitts(Daudi) | 5.55 | |
| Lymphoma_burkitts(Raji) | 6.15 | |
| MedullaOblongata | 4.7 | |
| OccipitalLobe | 8.55 | |
| OlfactoryBulb | 3.45 | |
| Ovary | 2.9 | |
| Pancreas | 3.5 | |
| PancreaticIslet | 4.65 | |
| ParietalLobe | 5.6 | |
| Pituitary | 5.15 | |
| Placenta | 4.5 | |
| Pons | 4.95 | |
| PrefrontalCortex | 6.55 | |
| Prostate | 5.15 | |
| Salivarygland | 3.5 | |
| SkeletalMuscle | 5.05 | |
| Skin | 3.45 | |
| SmoothMuscle | 4.9 | |
| Spinalcord | 5.75 | |
| SubthalamicNucleus | 8 | |
| SuperiorCervicalGanglion | 5.5 | |
| TemporalLobe | 4.75 | |
| Testis | 3.7 | |
| TestisGermCell | 3.7 | |
| TestisIntersitial | 3.75 | |
| TestisLeydigCell | 4.35 | |
| TestisSeminiferousTubule | 3.75 | |
| Thalamus | 4.6 | |
| Thymus | 3.45 | |
| Thyroid | 5.45 | |
| Tongue | 4.3 | |
| Tonsil | 4.25 | |
| Trachea | 3.7 | |
| TrigeminalGanglion | 4.45 | |
| Uterus | 3.65 | |
| UterusCorpus | 3.9 | |
| WholeBlood | 4.75 | |
| Wholebrain | 3.85 | |
| colon | 4.35 | |
| pineal_day | 5.48 | |
| pineal_night | 5.36 | |
| retina | 5.275 | |
| small_intestine | 4.1 | |
- Probe name: CUST_483_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.32 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.83 ± 0.2 | |
| Basal Part of Pons | 9.39 ± 0.33 | |
| Cerebellar Cortex | 8.8 ± 0.28 | |
| Cerebellar Nuclei | 8.49 ± 0.33 | |
| Claustrum | 9.72 ± 0.23 | |
| Epithalamus | 8.23 ± 0.59 | |
| Frontal Lobe | 9.19 ± 0.51 | |
| Globus Pallidus | 8.46 ± 0.45 | |
| Hypothalamus | 8.56 ± 0.6 | |
| Insula | 9.17 ± 0.29 | |
| Limbic Lobe | 9.21 ± 0.41 | |
| Mesencephalon | 8.95 ± 0.51 | |
| Myelencephalon | 9.02 ± 0.56 | |
| Occipital Lobe | 8.95 ± 0.44 | |
| Parietal Lobe | 9.26 ± 0.5 | |
| Pontine Tegmentum | 8.93 ± 0.41 | |
| Striatum | 8.28 ± 0.65 | |
| Subthalamus | 8.64 ± 0.1 | |
| Temporal Lobe | 9.24 ± 0.35 | |
| Thalamus | 9.3 ± 0.39 | |
| White Matter | 7.75 ± 0.61 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| C130076O07Rik | CB | Cerebellum | 24.49 | |
| 33.11 | | |||
| C130076O07Rik | CTX | Cerebral cortex | 96.29 | |
| 92.38 | | |||
| C130076O07Rik | HIP | Hippocampal region | 71.1 | |
| 100 | | |||
| C130076O07Rik | HPF | Hippocampal formation | 82.36 | |
| 100 | | |||
| C130076O07Rik | HY | Hypothalamus | 13.61 | |
| 11.08 | | |||
| C130076O07Rik | LSX | Lateral septal complex | 13.61 | |
| 11.55 | | |||
| C130076O07Rik | MB | Midbrain | 12.67 | |
| 12.43 | | |||
| C130076O07Rik | MY | Medulla | 21.8 | |
| 32.9 | | |||
| C130076O07Rik | OLF | Olfactory bulb | 92.2 | |
| 80.69 | | |||
| C130076O07Rik | P | Pons | 16.66 | |
| 19.67 | | |||
| C130076O07Rik | PAL | Pallidum | 13.52 | |
| 13.19 | | |||
| C130076O07Rik | RHP | Retrohippocampal region | 97.6 | |
| 94.03 | | |||
| C130076O07Rik | sAMY | Striatum-like amygdalar nuclei | 50.82 | |
| 45.75 | | |||
| C130076O07Rik | STR | Striatum | 22.49 | |
| 21.12 | | |||
| C130076O07Rik | STRd | Striatum dorsal region | 17.95 | |
| 18.29 | | |||
| C130076O07Rik | STRv | Striatum ventral region | 28.18 | |
| 21.61 | | |||
| C130076O07Rik | TH | Thalamus | 23.98 | |
| 23.17 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00136382 | 15 | 405 | 419 | KIDGDTIIFSNVQER | Peptide Atlas |