Annotation Detail for NRF1
Basic Information Top
| Gene Symbol: | NRF1 ( ALPHA-PAL ) |
|---|---|
| Gene Full Name: | nuclear respiratory factor 1 |
| Band: | 7q32.2 |
| Quick Links | Entrez ID:4899; OMIM: 600879; Uniprot ID:NRF1_HUMAN; ENSEMBL ID: ENSG00000106459; HGNC ID: 7996 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654363
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 29 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 2 / 34366 | 58 |  |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 55 / 3360307 | 16 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 1 / 29757 | 33 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 9 / 211054 | 42 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 3 / 330442 | 9 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204651_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.6 | |
| Adipocyte | 5.4 | |
| AdrenalCortex | 6.2 | |
| Adrenalgland | 4.8 | |
| Amygdala | 5.85 | |
| Appendix | 6.55 | |
| AtrioventricularNode | 4.65 | |
| BDCA4+_DentriticCells | 6.05 | |
| Bonemarrow | 6.1 | |
| BronchialEpithelialCells | 5.25 | |
| CD105+_Endothelial | 5.9 | |
| CD14+_Monocytes | 6.5 | |
| CD19+_BCells(neg._sel.) | 11.5 | |
| CD33+_Myeloid | 8.9 | |
| CD34+ | 8.65 | |
| CD4+_Tcells | 8.1 | |
| CD56+_NKCells | 7.6 | |
| CD71+_EarlyErythroid | 20.2 | |
| CD8+_Tcells | 8.4 | |
| CardiacMyocytes | 7.85 | |
| Caudatenucleus | 4.95 | |
| Cerebellum | 4.8 | |
| CerebellumPeduncles | 6.4 | |
| CiliaryGanglion | 4.25 | |
| CingulateCortex | 5.85 | |
| Colorectaladenocarcinoma | 5.65 | |
| DorsalRootGanglion | 6.15 | |
| FetalThyroid | 5.45 | |
| Fetalbrain | 6.25 | |
| Fetalliver | 5.3 | |
| Fetallung | 4.35 | |
| GlobusPallidus | 4.15 | |
| Heart | 7.6 | |
| Hypothalamus | 5.8 | |
| Kidney | 4.7 | |
| Leukemia_chronicMyelogenousK-562 | 5.05 | |
| Leukemia_promyelocytic-HL-60 | 4.8 | |
| Leukemialymphoblastic(MOLT-4) | 4.55 | |
| Liver | 7.65 | |
| Lung | 6.05 | |
| Lymphnode | 5 | |
| Lymphoma_burkitts(Daudi) | 7.2 | |
| Lymphoma_burkitts(Raji) | 8.1 | |
| MedullaOblongata | 5.1 | |
| OccipitalLobe | 5 | |
| OlfactoryBulb | 4.45 | |
| Ovary | 4 | |
| Pancreas | 4.6 | |
| PancreaticIslet | 6.05 | |
| ParietalLobe | 6.15 | |
| Pituitary | 6.55 | |
| Placenta | 5.65 | |
| Pons | 5.4 | |
| PrefrontalCortex | 8.9 | |
| Prostate | 6.55 | |
| Salivarygland | 4.5 | |
| SkeletalMuscle | 6.95 | |
| Skin | 4.8 | |
| SmoothMuscle | 6.1 | |
| Spinalcord | 6 | |
| SubthalamicNucleus | 5.25 | |
| SuperiorCervicalGanglion | 9.7 | |
| TemporalLobe | 5.35 | |
| Testis | 4.8 | |
| TestisGermCell | 4.6 | |
| TestisIntersitial | 4.6 | |
| TestisLeydigCell | 5.65 | |
| TestisSeminiferousTubule | 4.85 | |
| Thalamus | 5.65 | |
| Thymus | 6.1 | |
| Thyroid | 6.85 | |
| Tongue | 5.7 | |
| Tonsil | 5.5 | |
| Trachea | 4.55 | |
| TrigeminalGanglion | 7.1 | |
| Uterus | 4.45 | |
| UterusCorpus | 5.35 | |
| WholeBlood | 12.9 | |
| Wholebrain | 4.7 | |
| colon | 5.55 | |
| pineal_day | 9.56 | |
| pineal_night | 7.94 | |
| retina | 10.525 | |
| small_intestine | 5.4 | |
- Probe name: CUST_9120_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.04 ± 0.72 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.17 ± 0.66 | |
| Basal Part of Pons | 3.59 ± 0.49 | |
| Cerebellar Cortex | 4.5 ± 0.26 | |
| Cerebellar Nuclei | 3.95 ± 0.65 | |
| Claustrum | 3.73 ± 0.9 | |
| Epithalamus | 4.34 ± 0.58 | |
| Frontal Lobe | 3.92 ± 0.55 | |
| Globus Pallidus | 4.08 ± 0.64 | |
| Hypothalamus | 3.57 ± 0.34 | |
| Insula | 3.87 ± 0.39 | |
| Limbic Lobe | 3.88 ± 0.63 | |
| Mesencephalon | 4.11 ± 0.68 | |
| Myelencephalon | 3.96 ± 0.63 | |
| Occipital Lobe | 3.9 ± 0.56 | |
| Parietal Lobe | 3.9 ± 0.62 | |
| Pontine Tegmentum | 4.02 ± 0.57 | |
| Striatum | 3.98 ± 0.63 | |
| Subthalamus | 3.74 ± 0.87 | |
| Temporal Lobe | 3.95 ± 0.57 | |
| Thalamus | 3.85 ± 0.55 | |
| White Matter | 5.3 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nrf1 | CB | Cerebellum | 0.97 | |
| 0.72 | | |||
| Nrf1 | CTX | Cerebral cortex | 0.21 | |
| 0.17 | | |||
| Nrf1 | HIP | Hippocampal region | 3.28 | |
| 1.45 | | |||
| Nrf1 | HPF | Hippocampal formation | 2.29 | |
| 1 | | |||
| Nrf1 | HY | Hypothalamus | 0.42 | |
| 0.2 | | |||
| Nrf1 | LSX | Lateral septal complex | 0.3 | |
| 0.15 | | |||
| Nrf1 | MB | Midbrain | 0.66 | |
| 0.51 | | |||
| Nrf1 | MY | Medulla | 2.81 | |
| 1.82 | | |||
| Nrf1 | OLF | Olfactory bulb | 0.32 | |
| 0.21 | | |||
| Nrf1 | P | Pons | 1.79 | |
| 1.28 | | |||
| Nrf1 | PAL | Pallidum | 0.16 | |
| 0.25 | | |||
| Nrf1 | RHP | Retrohippocampal region | 0.61 | |
| 0.38 | | |||
| Nrf1 | sAMY | Striatum-like amygdalar nuclei | 0.2 | |
| 0.22 | | |||
| Nrf1 | STR | Striatum | 0.17 | |
| 0.11 | | |||
| Nrf1 | STRd | Striatum dorsal region | 0.12 | |
| 0.08 | | |||
| Nrf1 | STRv | Striatum ventral region | 0.19 | |
| 0.13 | | |||
| Nrf1 | TH | Thalamus | 0.17 | |
| 0.11 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00072099 | 13 | 92 | 104 | KRPHVFESNPSIR | Peptide Atlas |