Annotation Detail for RNF165
Basic Information Top
| Gene Symbol: | RNF165 ( ARKL2 ) |
|---|---|
| Gene Full Name: | ring finger protein 165 |
| Band: | 18q21.1 |
| Quick Links | Entrez ID:494470; OMIM: NA; Uniprot ID:RN165_HUMAN; ENSEMBL ID: ENSG00000141622; HGNC ID: 31696 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.501114
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 11 / 1939121 | 5 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 60 / 3360307 | 17 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 39 / 1100989 | 35 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_702_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.01 ± 0.68 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.15 ± 0.47 | |
| Basal Part of Pons | 4.64 ± 0.4 | |
| Cerebellar Cortex | 4.82 ± 0.52 | |
| Cerebellar Nuclei | 4 ± 0.33 | |
| Claustrum | 4.83 ± 0.56 | |
| Epithalamus | 4.37 ± 0.71 | |
| Frontal Lobe | 4.89 ± 0.65 | |
| Globus Pallidus | 2.67 ± 0.53 | |
| Hypothalamus | 4.03 ± 0.55 | |
| Insula | 5.13 ± 0.4 | |
| Limbic Lobe | 5.26 ± 0.54 | |
| Mesencephalon | 4.48 ± 0.83 | |
| Myelencephalon | 4.63 ± 0.61 | |
| Occipital Lobe | 4.3 ± 0.69 | |
| Parietal Lobe | 4.76 ± 0.61 | |
| Pontine Tegmentum | 4.76 ± 0.79 | |
| Striatum | 4.27 ± 0.8 | |
| Subthalamus | 4.35 ± 0.5 | |
| Temporal Lobe | 5.13 ± 0.46 | |
| Thalamus | 4.45 ± 0.67 | |
| White Matter | 2.38 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gm96 | CB | Cerebellum | 70.41 |  |
| 100 | | |||
| Gm96 | CTX | Cerebral cortex | 100 | |
| 92.51 | | |||
| Gm96 | HIP | Hippocampal region | 72.47 | |
| 100 | | |||
| Gm96 | HPF | Hippocampal formation | 84.23 | |
| 100 | | |||
| Gm96 | HY | Hypothalamus | 37.03 | |
| 28.97 | | |||
| Gm96 | LSX | Lateral septal complex | 74.02 | |
| 60.24 | | |||
| Gm96 | MB | Midbrain | 38.1 | |
| 33.47 | | |||
| Gm96 | MY | Medulla | 32.98 | |
| 33.12 | | |||
| Gm96 | OLF | Olfactory bulb | 100 | |
| 97.07 | | |||
| Gm96 | P | Pons | 32.06 | |
| 30.33 | | |||
| Gm96 | PAL | Pallidum | 39.68 | |
| 34.47 | | |||
| Gm96 | RHP | Retrohippocampal region | 100 | |
| 95.13 | | |||
| Gm96 | sAMY | Striatum-like amygdalar nuclei | 67.45 | |
| 50.79 | | |||
| Gm96 | STR | Striatum | 74.08 | |
| 56.72 | | |||
| Gm96 | STRd | Striatum dorsal region | 74.67 | |
| 56.97 | | |||
| Gm96 | STRv | Striatum ventral region | 76.16 | |
| 56.83 | | |||
| Gm96 | TH | Thalamus | 51.54 | |
| 43.37 | |