AutismKB 2.0

Annotation Detail for OLR1


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Basic Information Top
Gene Symbol:OLR1 ( CLEC8A,LOX1,LOXIN,SCARE1,SLOX1 )
Gene Full Name: oxidized low density lipoprotein (lectin-like) receptor 1
Band: 12p13.2
Quick LinksEntrez ID:4973; OMIM: 602601; Uniprot ID:OLR1_HUMAN; ENSEMBL ID: ENSG00000173391; HGNC ID: 8133
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult80 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor4 / 34366116
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor64 / 172903701
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma3 / 10688328
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia7 / 9725071
normal113 / 336030733
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood6 / 12347848
bone0 / 716550 
bone marrow0 / 488010 
brain38 / 110098934
cervix4 / 4817183
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus64 / 202093166
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney18 / 21177784
larynx0 / 241450 
liver4 / 20774319
lung13 / 33697438
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta47 / 280825167
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210004_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.2
Adipocyte7.4
AdrenalCortex8.95
Adrenalgland6.75
Amygdala7.95
Appendix9.3
AtrioventricularNode6.9
BDCA4+_DentriticCells7.9
Bonemarrow9.85
BronchialEpithelialCells7.5
CD105+_Endothelial7.7
CD14+_Monocytes8.25
CD19+_BCells(neg._sel.)7.8
CD33+_Myeloid9.35
CD34+10.75
CD4+_Tcells8.1
CD56+_NKCells8.35
CD71+_EarlyErythroid7.35
CD8+_Tcells7.15
CardiacMyocytes12.35
Caudatenucleus7
Cerebellum6.35
CerebellumPeduncles9.05
CiliaryGanglion6
CingulateCortex8
Colorectaladenocarcinoma7.8
DorsalRootGanglion6.6
FetalThyroid7.55
Fetalbrain7.6
Fetalliver6.8
Fetallung6.2
GlobusPallidus5.95
Heart12.1
Hypothalamus8.25
Kidney6.65
Leukemia_chronicMyelogenousK-5627
Leukemia_promyelocytic-HL-606.85
Leukemialymphoblastic(MOLT-4)6.05
Liver12.55
Lung8.65
Lymphnode6.5
Lymphoma_burkitts(Daudi)10.15
Lymphoma_burkitts(Raji)12.65
MedullaOblongata7
OccipitalLobe6.85
OlfactoryBulb6.05
Ovary6.1
Pancreas6.4
PancreaticIslet8.3
ParietalLobe8.5
Pituitary8.95
Placenta18.95
Pons7.5
PrefrontalCortex9.45
Prostate8.95
Salivarygland6.55
SkeletalMuscle9.6
Skin7
SmoothMuscle8.7
Spinalcord9.4
SubthalamicNucleus7.25
SuperiorCervicalGanglion9.9
TemporalLobe7.2
Testis6.6
TestisGermCell6.05
TestisIntersitial6.55
TestisLeydigCell7.85
TestisSeminiferousTubule6.55
Thalamus7.95
Thymus6.05
Thyroid9.65
Tongue8.25
Tonsil7.7
Trachea6.35
TrigeminalGanglion9.75
Uterus6.2
UterusCorpus7.3
WholeBlood8.55
Wholebrain6.3
colon7.8
pineal_day9.32
pineal_night9.04
retina9.625
small_intestine7.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16345_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.68 ± 1.05
Basal Forebrain2.13 ± 0.22
Basal Part of Pons2.89 ± 0.84
Cerebellar Cortex1.73 ± 0.39
Cerebellar Nuclei3.17 ± 0.74
Claustrum2.76 ± 0.63
Epithalamus3.19 ± 0.91
Frontal Lobe2.08 ± 0.86
Globus Pallidus4.03 ± 0.67
Hypothalamus2.8 ± 1.72
Insula1.97 ± 1.07
Limbic Lobe1.96 ± 0.89
Mesencephalon2.48 ± 0.79
Myelencephalon2.48 ± 0.98
Occipital Lobe2.87 ± 0.95
Parietal Lobe2.94 ± 0.84
Pontine Tegmentum2.22 ± 0.68
Striatum2.82 ± 0.78
Subthalamus2.45 ± 0.77
Temporal Lobe2.54 ± 0.86
Thalamus2.26 ± 0.88
White Matter3.9 ± 0.37
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Olr1CBCerebellum5.93
8.94
Olr1CTXCerebral cortex2.86
2.64
Olr1HIPHippocampal region2.07
2.96
Olr1HPFHippocampal formation3.54
3.7
Olr1HYHypothalamus0.4
0.54
Olr1LSXLateral septal complex0.28
0.29
Olr1MBMidbrain0.9
1.3
Olr1MYMedulla6.13
7.43
Olr1OLFOlfactory bulb2.29
1.96
Olr1PPons0.8
0.92
Olr1PALPallidum0.45
0.37
Olr1RHPRetrohippocampal region6.71
5.35
Olr1sAMYStriatum-like amygdalar nuclei1.7
1.55
Olr1STRStriatum2.14
1.79
Olr1STRdStriatum dorsal region3.09
2.62
Olr1STRvStriatum ventral region0.25
0.16
Olr1THThalamus5.83
7.85
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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