AutismKB 2.0

Annotation Detail for SCAPER


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Basic Information Top
Gene Symbol:SCAPER ( FLJ31533,FLJ31953,FLJ46212,KIAA1454,ZNF291,Zfp291 )
Gene Full Name: S-phase cyclin A-associated protein in the ER
Band: 15q24.3
Quick LinksEntrez ID:49855; OMIM: 611611; Uniprot ID:SCAPE_HUMAN; ENSEMBL ID: ENSG00000140386; HGNC ID: 13081
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus27 / 56401247
neonate1 / 3109732
infant1 / 2362042
juvenile3 / 5555653
adult78 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor4 / 11424635
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor12 / 26384545
glioma0 / 1068830 
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal120 / 336030735
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer7 / 10268068
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone6 / 7165583
bone marrow0 / 488010 
brain50 / 110098945
cervix0 / 481710 
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye13 / 21105461
heart5 / 8962655
intestine5 / 23447221
kidney3 / 21177714
larynx0 / 241450 
liver7 / 20774333
lung3 / 3369748
lymph0 / 442700 
lymph node2 / 9161021
mammary gland3 / 15327119
mouth2 / 6705229
muscle4 / 10771537
nerve0 / 157680 
ovary3 / 10205129
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta5 / 28082517
prostate8 / 18934542
salivary gland0 / 201550 
skin1 / 2105744
spleen2 / 5395237
stomach2 / 9661920
testis24 / 33044272
thymus2 / 8113124
thyroid2 / 4747342
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 216399_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.2
Adipocyte5.35
AdrenalCortex5.85
Adrenalgland4.7
Amygdala7.2
Appendix5.75
AtrioventricularNode4.4
BDCA4+_DentriticCells6.25
Bonemarrow5.45
BronchialEpithelialCells5.2
CD105+_Endothelial5.7
CD14+_Monocytes6
CD19+_BCells(neg._sel.)6.4
CD33+_Myeloid11
CD34+7.1
CD4+_Tcells6.65
CD56+_NKCells8.15
CD71+_EarlyErythroid5.2
CD8+_Tcells5.6
CardiacMyocytes7.85
Caudatenucleus5
Cerebellum4.5
CerebellumPeduncles6.3
CiliaryGanglion4.7
CingulateCortex5.8
Colorectaladenocarcinoma5.6
DorsalRootGanglion4.3
FetalThyroid5.45
Fetalbrain8.4
Fetalliver4.8
Fetallung4.5
GlobusPallidus4.15
Heart7.1
Hypothalamus6.2
Kidney4.5
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.9
Leukemialymphoblastic(MOLT-4)4.45
Liver7.35
Lung6.25
Lymphnode4.8
Lymphoma_burkitts(Daudi)7.15
Lymphoma_burkitts(Raji)8.05
MedullaOblongata5.2
OccipitalLobe5.05
OlfactoryBulb4.4
Ovary3.75
Pancreas4.45
PancreaticIslet5.9
ParietalLobe5.85
Pituitary6.6
Placenta5.7
Pons5.35
PrefrontalCortex8.75
Prostate6.6
Salivarygland4.5
SkeletalMuscle6.6
Skin4.5
SmoothMuscle6.15
Spinalcord6
SubthalamicNucleus5.1
SuperiorCervicalGanglion6.65
TemporalLobe5.1
Testis5.45
TestisGermCell4.75
TestisIntersitial4.7
TestisLeydigCell6.7
TestisSeminiferousTubule6.3
Thalamus5.7
Thymus4.4
Thyroid7.05
Tongue5.55
Tonsil5.4
Trachea4.65
TrigeminalGanglion5.65
Uterus4.65
UterusCorpus5
WholeBlood6.05
Wholebrain4.8
colon5.65
pineal_day13.66
pineal_night19.36
retina7.925
small_intestine5.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P163408
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.44 ± 0.5
Basal Forebrain5.67 ± 0.3
Basal Part of Pons5.71 ± 0.43
Cerebellar Cortex5.85 ± 0.34
Cerebellar Nuclei5.22 ± 0.69
Claustrum5.22 ± 1.14
Epithalamus5.71 ± 0.58
Frontal Lobe5.75 ± 0.47
Globus Pallidus5.66 ± 0.37
Hypothalamus6.14 ± 0.35
Insula5.89 ± 0.61
Limbic Lobe5.42 ± 0.65
Mesencephalon5.57 ± 0.61
Myelencephalon5.47 ± 0.62
Occipital Lobe4.88 ± 0.71
Parietal Lobe5.44 ± 0.46
Pontine Tegmentum5.64 ± 0.55
Striatum4.88 ± 0.43
Subthalamus5.89 ± 0.46
Temporal Lobe5.77 ± 0.51
Thalamus5.39 ± 0.58
White Matter5.94 ± 0.42
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zfp291CBCerebellum2.22
2.83
Zfp291CTXCerebral cortex0.28
0.36
Zfp291HIPHippocampal region0.21
0.25
Zfp291HPFHippocampal formation0.21
0.29
Zfp291HYHypothalamus0.17
0.27
Zfp291LSXLateral septal complex0.11
0.32
Zfp291MBMidbrain0.44
0.63
Zfp291MYMedulla4.03
4.41
Zfp291OLFOlfactory bulb0.58
1.02
Zfp291PPons1.69
1.99
Zfp291PALPallidum0.21
0.27
Zfp291RHPRetrohippocampal region0.2
0.36
Zfp291sAMYStriatum-like amygdalar nuclei0.13
0.08
Zfp291STRStriatum0.3
0.33
Zfp291STRdStriatum dorsal region0.42
0.46
Zfp291STRvStriatum ventral region0.1
0.07
Zfp291THThalamus0.17
0.28
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00518827 25 228 252 AHHTGSTASSEITPAQSCPPMTVQK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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