AutismKB 2.0

Annotation Detail for SLC22A18AS


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Basic Information Top
Gene Symbol:SLC22A18AS ( BWR1B,BWSCR1B,ORCTL2S,SLC22A1LS,p27-BWR1B )
Gene Full Name: solute carrier family 22 (organic cation transporter), member 18 antisense
Band: 11p15.4
Quick LinksEntrez ID:5003; OMIM: 603240; Uniprot ID:BWR1B_HUMAN; ENSEMBL ID: ENSG00000254827; HGNC ID: 10965
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult2 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal9 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine7 / 23447229
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206097_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.5
Adipocyte6.75
AdrenalCortex7
Adrenalgland5.65
Amygdala7.2
Appendix6.8
AtrioventricularNode5.1
BDCA4+_DentriticCells7.55
Bonemarrow6.65
BronchialEpithelialCells6.7
CD105+_Endothelial6.85
CD14+_Monocytes7.9
CD19+_BCells(neg._sel.)7.3
CD33+_Myeloid8.75
CD34+8.65
CD4+_Tcells7.45
CD56+_NKCells8.1
CD71+_EarlyErythroid6.3
CD8+_Tcells6.6
CardiacMyocytes8.55
Caudatenucleus6
Cerebellum5.5
CerebellumPeduncles7.65
CiliaryGanglion4.75
CingulateCortex7.05
Colorectaladenocarcinoma6.8
DorsalRootGanglion5.1
FetalThyroid7.35
Fetalbrain6.8
Fetalliver5.85
Fetallung5.4
GlobusPallidus4.85
Heart8.65
Hypothalamus7.45
Kidney5.5
Leukemia_chronicMyelogenousK-5626.15
Leukemia_promyelocytic-HL-606
Leukemialymphoblastic(MOLT-4)5.45
Liver8.85
Lung7.5
Lymphnode5.85
Lymphoma_burkitts(Daudi)8.55
Lymphoma_burkitts(Raji)12.15
MedullaOblongata6.25
OccipitalLobe6.1
OlfactoryBulb5.35
Ovary4.45
Pancreas5.4
PancreaticIslet7.1
ParietalLobe7.15
Pituitary7.9
Placenta6.4
Pons6.45
PrefrontalCortex8.55
Prostate8
Salivarygland5.45
SkeletalMuscle9
Skin5.05
SmoothMuscle7.75
Spinalcord7.2
SubthalamicNucleus6.1
SuperiorCervicalGanglion7.65
TemporalLobe6.2
Testis5.7
TestisGermCell5.8
TestisIntersitial5.7
TestisLeydigCell6.7
TestisSeminiferousTubule5.8
Thalamus6.85
Thymus5.35
Thyroid8.55
Tongue6.6
Tonsil6.55
Trachea5.5
TrigeminalGanglion7.5
Uterus5.6
UterusCorpus6.15
WholeBlood7.45
Wholebrain5.55
colon8
pineal_day8.3
pineal_night8.32
retina8.25
small_intestine6.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9884_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.79 ± 0.9
Basal Forebrain2.2 ± 0.56
Basal Part of Pons2.16 ± 0.62
Cerebellar Cortex2.87 ± 0.54
Cerebellar Nuclei2.38 ± 0.71
Claustrum2.95 ± 0.75
Epithalamus2.08 ± 0.66
Frontal Lobe2.39 ± 0.74
Globus Pallidus2.6 ± 0.8
Hypothalamus2.5 ± 0.71
Insula2.39 ± 0.52
Limbic Lobe2.59 ± 0.79
Mesencephalon2.46 ± 0.7
Myelencephalon2.45 ± 0.76
Occipital Lobe2.52 ± 0.93
Parietal Lobe2.56 ± 0.82
Pontine Tegmentum2.51 ± 0.75
Striatum2.11 ± 0.7
Subthalamus2.24 ± 0.66
Temporal Lobe2.42 ± 0.86
Thalamus2.24 ± 0.82
White Matter1.98 ± 0.23
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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