AutismKB 2.0

Annotation Detail for ORM1


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Basic Information Top
Gene Symbol:ORM1 ( AGP-A,AGP1,ORM )
Gene Full Name: orosomucoid 1
Band: 9q32
Quick LinksEntrez ID:5004; OMIM: 138600; Uniprot ID:A1AG1_HUMAN; ENSEMBL ID: ENSG00000229314; HGNC ID: 8498
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus35 / 56401262
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult203 / 1939121104
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor37 / 96359383
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal562 / 3360307167
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood6 / 12347848
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart2 / 8962622
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver522 / 2077432512
lung16 / 33697447
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle10 / 10771592
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate20 / 189345105
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205041_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.95
Adipocyte7.55
AdrenalCortex9.55
Adrenalgland6.9
Amygdala7.9
Appendix8.25
AtrioventricularNode7.7
BDCA4+_DentriticCells7.45
Bonemarrow101.3
BronchialEpithelialCells7.55
CD105+_Endothelial7.5
CD14+_Monocytes8.05
CD19+_BCells(neg._sel.)7.9
CD33+_Myeloid9.35
CD34+9
CD4+_Tcells8.05
CD56+_NKCells8.7
CD71+_EarlyErythroid7.25
CD8+_Tcells7.1
CardiacMyocytes14.5
Caudatenucleus6.9
Cerebellum6.25
CerebellumPeduncles9.3
CiliaryGanglion6.15
CingulateCortex7.95
Colorectaladenocarcinoma7.65
DorsalRootGanglion7.05
FetalThyroid8.15
Fetalbrain7.35
Fetalliver943.65
Fetallung303.1
GlobusPallidus5.8
Heart13.1
Hypothalamus8.1
Kidney6.5
Leukemia_chronicMyelogenousK-5626.9
Leukemia_promyelocytic-HL-606.75
Leukemialymphoblastic(MOLT-4)5.9
Liver15384.75
Lung8.35
Lymphnode6.4
Lymphoma_burkitts(Daudi)10.05
Lymphoma_burkitts(Raji)12.05
MedullaOblongata6.85
OccipitalLobe6.8
OlfactoryBulb5.9
Ovary5.2
Pancreas6.25
PancreaticIslet8.45
ParietalLobe8.7
Pituitary8.95
Placenta7.4
Pons7.55
PrefrontalCortex9.4
Prostate275.4
Salivarygland6.25
SkeletalMuscle15.7
Skin6.4
SmoothMuscle8.6
Spinalcord8.2
SubthalamicNucleus7.15
SuperiorCervicalGanglion9.3
TemporalLobe7.1
Testis6.6
TestisGermCell6.15
TestisIntersitial6.65
TestisLeydigCell8
TestisSeminiferousTubule6.45
Thalamus7.9
Thymus5.6
Thyroid9.4
Tongue8.4
Tonsil7.5
Trachea6.4
TrigeminalGanglion8.45
Uterus6.2
UterusCorpus8.8
WholeBlood35.1
Wholebrain6.25
colon7.7
pineal_day9.48
pineal_night9.24
retina9.25
small_intestine7.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_195_PI417507815
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.05 ± 1.06
Basal Forebrain1.85 ± 0.53
Basal Part of Pons1.42 ± 0.6
Cerebellar Cortex1.32 ± 0.55
Cerebellar Nuclei2.11 ± 0.7
Claustrum2.38 ± 0.76
Epithalamus1.37 ± 0.96
Frontal Lobe1.65 ± 0.74
Globus Pallidus2.27 ± 0.5
Hypothalamus1.62 ± 0.83
Insula1.55 ± 0.77
Limbic Lobe1.76 ± 0.87
Mesencephalon1.86 ± 0.76
Myelencephalon1.75 ± 0.71
Occipital Lobe1.71 ± 0.77
Parietal Lobe1.72 ± 0.83
Pontine Tegmentum1.74 ± 0.73
Striatum2.08 ± 0.92
Subthalamus1.79 ± 0.73
Temporal Lobe1.52 ± 0.81
Thalamus1.71 ± 0.63
White Matter1.69 ± 0.16
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Orm1CBCerebellum0.34
0.8
Orm1CTXCerebral cortex0.23
0.66
Orm1HIPHippocampal region0.19
0.79
Orm1HPFHippocampal formation0.14
0.52
Orm1HYHypothalamus0.78
1.38
Orm1LSXLateral septal complex0.07
0.06
Orm1MBMidbrain0.8
1.26
Orm1MYMedulla0.41
1.06
Orm1OLFOlfactory bulb1.22
1.88
Orm1PPons0.87
2.17
Orm1PALPallidum0.12
0.49
Orm1RHPRetrohippocampal region0.01
0
Orm1sAMYStriatum-like amygdalar nuclei0.14
0.26
Orm1STRStriatum0.29
0.61
Orm1STRdStriatum dorsal region0.15
0.54
Orm1STRvStriatum ventral region0.89
1.37
Orm1THThalamus0.2
0.59
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
A1AG1_HUMAN_109 15 109 123 YVGGQEHFAHLLILR PRIDE
A1AG1_HUMAN_111 13 111 123 GGQEHFAHLLILR PRIDE
A1AG1_HUMAN_154 14 154 167 EQLGEFYEALDCLR PRIDE
A1AG1_HUMAN_171 9 171 179 SDVVYTDWK PRIDE
A1AG1_HUMAN_43 9 43 51 WFYIASAFR PRIDE
A1AG1_HUMAN_58 16 58 73 SVQEIQATFFYFTPNK PRIDE
A1AG1_HUMAN_74 8 74 81 TEDTIFLR PRIDE
PAp00024343 16 23 38 CANLVPVPITNATLDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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