AutismKB 2.0

Annotation Detail for OXCT1


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Basic Information Top
Gene Symbol:OXCT1 ( OXCT,SCOT )
Gene Full Name: 3-oxoacid CoA transferase 1
Band: 5p13.1
Quick LinksEntrez ID:5019; OMIM: 601424; Uniprot ID:SCOT1_HUMAN; ENSEMBL ID: ENSG00000083720; HGNC ID: 8527
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus39 / 56401269
neonate3 / 3109796
infant0 / 236200 
juvenile3 / 5555653
adult118 / 193912160
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor10 / 94178106
cervical tumor6 / 34366174
chondrosarcoma7 / 8282384
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor11 / 26384541
glioma4 / 10688337
head and neck tumor11 / 13630280
kidney tumor11 / 68959159
leukemia8 / 9584283
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia5 / 9725051
normal310 / 336030792
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer8 / 10268077
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland4 / 33197120
ascites8 / 40015199
bladder1 / 2975733
blood5 / 12347840
bone5 / 7165569
bone marrow2 / 4880140
brain190 / 1100989172
cervix8 / 48171166
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye5 / 21105423
heart15 / 89626167
intestine5 / 23447221
kidney35 / 211777165
larynx1 / 2414541
liver6 / 20774328
lung12 / 33697435
lymph0 / 442700 
lymph node9 / 9161098
mammary gland10 / 15327165
mouth8 / 67052119
muscle6 / 10771555
nerve0 / 157680 
ovary2 / 10205119
pancreas3 / 21481213
parathyroid3 / 20539146
pharynx3 / 4132872
pituitary gland2 / 16585120
placenta3 / 28082510
prostate19 / 189345100
salivary gland0 / 201550 
skin13 / 21057461
spleen3 / 5395255
stomach2 / 9661920
testis18 / 33044254
thymus18 / 81131221
thyroid1 / 4747321
tonsil1 / 1699958
trachea13 / 52413248
umbilical cord0 / 136800 
uterus9 / 23287838
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202780_at
Cell line Expression level Expression bar
721_B_lymphoblasts404.9
Adipocyte138.1
AdrenalCortex46.4
Adrenalgland26
Amygdala185.5
Appendix27.95
AtrioventricularNode55.2
BDCA4+_DentriticCells29.85
Bonemarrow35.75
BronchialEpithelialCells51.6
CD105+_Endothelial22.45
CD14+_Monocytes7.7
CD19+_BCells(neg._sel.)106.05
CD33+_Myeloid14.4
CD34+109.85
CD4+_Tcells108.65
CD56+_NKCells35.75
CD71+_EarlyErythroid56.75
CD8+_Tcells76.75
CardiacMyocytes67
Caudatenucleus144.65
Cerebellum98.4
CerebellumPeduncles172.8
CiliaryGanglion36.45
CingulateCortex154.25
Colorectaladenocarcinoma23.3
DorsalRootGanglion54.65
FetalThyroid41.5
Fetalbrain188.05
Fetalliver24.45
Fetallung19.9
GlobusPallidus111.9
Heart68.3
Hypothalamus156.95
Kidney49
Leukemia_chronicMyelogenousK-56248.15
Leukemia_promyelocytic-HL-60118.45
Leukemialymphoblastic(MOLT-4)89.7
Liver25
Lung12.75
Lymphnode54.7
Lymphoma_burkitts(Daudi)138.7
Lymphoma_burkitts(Raji)84.65
MedullaOblongata139.25
OccipitalLobe181.65
OlfactoryBulb31.1
Ovary14.15
Pancreas18.15
PancreaticIslet27.25
ParietalLobe133.5
Pituitary92.4
Placenta12.9
Pons116.35
PrefrontalCortex170.6
Prostate56.35
Salivarygland39.15
SkeletalMuscle56.55
Skin55.8
SmoothMuscle51.95
Spinalcord79.3
SubthalamicNucleus174.6
SuperiorCervicalGanglion42.95
TemporalLobe152.6
Testis14.8
TestisGermCell28.1
TestisIntersitial18.15
TestisLeydigCell31.8
TestisSeminiferousTubule18.9
Thalamus153.65
Thymus83.7
Thyroid66.05
Tongue59.15
Tonsil57.2
Trachea39.85
TrigeminalGanglion35.7
Uterus51.15
UterusCorpus10.6
WholeBlood21.1
Wholebrain153.4
colon49.45
pineal_day108.26
pineal_night130.88
retina79.1
small_intestine45.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14161_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.24 ± 0.26
Basal Forebrain8.79 ± 0.23
Basal Part of Pons8.95 ± 0.32
Cerebellar Cortex8.83 ± 0.34
Cerebellar Nuclei8.51 ± 0.22
Claustrum9.27 ± 0.33
Epithalamus8.57 ± 0.43
Frontal Lobe8.87 ± 0.4
Globus Pallidus8.11 ± 0.31
Hypothalamus8.83 ± 0.36
Insula8.99 ± 0.27
Limbic Lobe9.22 ± 0.51
Mesencephalon8.8 ± 0.41
Myelencephalon8.85 ± 0.42
Occipital Lobe8.8 ± 0.39
Parietal Lobe8.92 ± 0.42
Pontine Tegmentum8.94 ± 0.35
Striatum8.67 ± 0.38
Subthalamus8.92 ± 0.05
Temporal Lobe9.09 ± 0.32
Thalamus8.87 ± 0.28
White Matter7.94 ± 0.36
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00007484 11 501 511 STGCDFAVSPK Peptide Atlas
SCOT1_HUMAN_356 13 356 368 QHEADADLINAGK PRIDE
SCOT1_HUMAN_84 21 84 104 GLTAVSNNAGVDNFGLGLLLR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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