AutismKB 2.0

Annotation Detail for CYHR1


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Basic Information Top
Gene Symbol:CYHR1 ( CHRP,KIAA0496,MGC13010 )
Gene Full Name: cysteine/histidine-rich 1
Band: 8q24.3
Quick LinksEntrez ID:50626; OMIM: NA; Uniprot ID:CYHR1_HUMAN; ENSEMBL ID: ENSG00000187954; HGNC ID: 17806
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus27 / 56401247
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult110 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor9 / 26384534
glioma16 / 106883149
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor3 / 9635931
lung tumor12 / 103127116
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal133 / 336030739
ovarian tumor5 / 7668265
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer8 / 10268077
retinoblastoma1 / 4635621
skin tumor6 / 12494948
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood2 / 12347816
bone5 / 7165569
bone marrow0 / 488010 
brain55 / 110098949
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye17 / 21105480
heart0 / 896260 
intestine17 / 23447272
kidney5 / 21177723
larynx4 / 24145165
liver4 / 20774319
lung23 / 33697468
lymph1 / 4427022
lymph node1 / 9161010
mammary gland8 / 15327152
mouth0 / 670520 
muscle2 / 10771518
nerve1 / 1576863
ovary5 / 10205148
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate17 / 18934589
salivary gland0 / 201550 
skin10 / 21057447
spleen1 / 5395218
stomach5 / 9661951
testis6 / 33044218
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213072_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.05
Adipocyte6.5
AdrenalCortex6.65
Adrenalgland6.9
Amygdala13.85
Appendix6.6
AtrioventricularNode4.55
BDCA4+_DentriticCells10
Bonemarrow6.85
BronchialEpithelialCells5.85
CD105+_Endothelial11.4
CD14+_Monocytes10.1
CD19+_BCells(neg._sel.)9
CD33+_Myeloid9.5
CD34+8.05
CD4+_Tcells7.05
CD56+_NKCells11.35
CD71+_EarlyErythroid10
CD8+_Tcells7.25
CardiacMyocytes7.6
Caudatenucleus9.35
Cerebellum5.45
CerebellumPeduncles7.8
CiliaryGanglion4.15
CingulateCortex6.95
Colorectaladenocarcinoma7.95
DorsalRootGanglion5.3
FetalThyroid6.5
Fetalbrain10.15
Fetalliver5
Fetallung4.85
GlobusPallidus6.15
Heart25.25
Hypothalamus7.55
Kidney5.05
Leukemia_chronicMyelogenousK-5626.7
Leukemia_promyelocytic-HL-605.55
Leukemialymphoblastic(MOLT-4)5.25
Liver44.75
Lung10.4
Lymphnode5.55
Lymphoma_burkitts(Daudi)7.3
Lymphoma_burkitts(Raji)18.5
MedullaOblongata5.65
OccipitalLobe5.35
OlfactoryBulb5.15
Ovary4.3
Pancreas5.8
PancreaticIslet6.75
ParietalLobe7.05
Pituitary7.8
Placenta6.8
Pons6.2
PrefrontalCortex8.1
Prostate15.65
Salivarygland4.7
SkeletalMuscle7.9
Skin4.9
SmoothMuscle7.45
Spinalcord7.2
SubthalamicNucleus5.55
SuperiorCervicalGanglion6.85
TemporalLobe6.3
Testis28.9
TestisGermCell11.25
TestisIntersitial12.7
TestisLeydigCell10.25
TestisSeminiferousTubule7.35
Thalamus6.85
Thymus5.4
Thyroid16.2
Tongue6.65
Tonsil5.35
Trachea5.5
TrigeminalGanglion6.55
Uterus5.65
UterusCorpus5.95
WholeBlood13.5
Wholebrain16.35
colon5.85
pineal_day12.14
pineal_night11.5
retina7.85
small_intestine6.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P40978
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.79 ± 0.61
Basal Forebrain4.65 ± 0.57
Basal Part of Pons5.05 ± 0.65
Cerebellar Cortex5.14 ± 0.58
Cerebellar Nuclei4.45 ± 0.6
Claustrum4.25 ± 1.04
Epithalamus4.75 ± 0.8
Frontal Lobe5.06 ± 0.58
Globus Pallidus4.16 ± 0.59
Hypothalamus5.04 ± 0.52
Insula5.09 ± 0.31
Limbic Lobe4.71 ± 0.67
Mesencephalon4.73 ± 0.66
Myelencephalon4.82 ± 0.63
Occipital Lobe4.31 ± 0.63
Parietal Lobe4.82 ± 0.57
Pontine Tegmentum4.78 ± 0.62
Striatum4.51 ± 0.56
Subthalamus4.7 ± 0.73
Temporal Lobe5.04 ± 0.52
Thalamus4.87 ± 0.54
White Matter4.13 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cyhr1CBCerebellum20.41
27.29
Cyhr1CTXCerebral cortex20.55
15.47
Cyhr1HIPHippocampal region16.18
16.35
Cyhr1HPFHippocampal formation18.52
16.44
Cyhr1HYHypothalamus5.84
4.26
Cyhr1LSXLateral septal complex3.19
1.79
Cyhr1MBMidbrain8.22
7.18
Cyhr1MYMedulla19.09
19.37
Cyhr1OLFOlfactory bulb13.65
9.33
Cyhr1PPons13.27
13.2
Cyhr1PALPallidum9.53
8.06
Cyhr1RHPRetrohippocampal region23.6
17.39
Cyhr1sAMYStriatum-like amygdalar nuclei3.2
2.2
Cyhr1STRStriatum7.31
5.5
Cyhr1STRdStriatum dorsal region8.55
6.88
Cyhr1STRvStriatum ventral region7.7
4.75
Cyhr1THThalamus14.05
12.14
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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