AutismKB 2.0

Annotation Detail for CALY


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Basic Information Top
Gene Symbol:CALY ( DRD1IP,NSG3 )
Gene Full Name: calcyon neuron-specific vesicular protein
Band: 10q26.3
Quick LinksEntrez ID:50632; OMIM: 604647; Uniprot ID:CALY_HUMAN; ENSEMBL ID: ENSG00000130643; HGNC ID: 17938
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult30 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor3 / 26384511
glioma7 / 10688365
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal65 / 336030719
ovarian tumor0 / 766820 
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain41 / 110098937
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye15 / 21105471
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary0 / 1020510 
pancreas22 / 214812102
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219896_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.7
Adipocyte3.75
AdrenalCortex3.9
Adrenalgland3.2
Amygdala328
Appendix3.85
AtrioventricularNode2.85
BDCA4+_DentriticCells4.1
Bonemarrow3.7
BronchialEpithelialCells3.8
CD105+_Endothelial3.75
CD14+_Monocytes4
CD19+_BCells(neg._sel.)4.05
CD33+_Myeloid4.85
CD34+4.8
CD4+_Tcells4.1
CD56+_NKCells4.45
CD71+_EarlyErythroid3.5
CD8+_Tcells3.6
CardiacMyocytes4.8
Caudatenucleus124.9
Cerebellum20.05
CerebellumPeduncles28.5
CiliaryGanglion2.75
CingulateCortex124.3
Colorectaladenocarcinoma3.75
DorsalRootGanglion2.9
FetalThyroid3.65
Fetalbrain47.7
Fetalliver3.25
Fetallung3.15
GlobusPallidus70.85
Heart4.85
Hypothalamus403.65
Kidney3
Leukemia_chronicMyelogenousK-5623.45
Leukemia_promyelocytic-HL-603.3
Leukemialymphoblastic(MOLT-4)3
Liver5.15
Lung4.2
Lymphnode3.2
Lymphoma_burkitts(Daudi)4.8
Lymphoma_burkitts(Raji)5.2
MedullaOblongata126.3
OccipitalLobe84.75
OlfactoryBulb2.95
Ovary2.45
Pancreas3.05
PancreaticIslet4.05
ParietalLobe81.4
Pituitary379.5
Placenta3.95
Pons176.15
PrefrontalCortex410.45
Prostate4.4
Salivarygland3
SkeletalMuscle4.3
Skin2.9
SmoothMuscle4.3
Spinalcord17.65
SubthalamicNucleus115.4
SuperiorCervicalGanglion4.3
TemporalLobe178
Testis3.25
TestisGermCell3.2
TestisIntersitial3.15
TestisLeydigCell3.75
TestisSeminiferousTubule3.25
Thalamus96.55
Thymus2.9
Thyroid4.6
Tongue3.65
Tonsil3.65
Trachea3.2
TrigeminalGanglion3.8
Uterus3.1
UterusCorpus3.35
WholeBlood4.2
Wholebrain226.1
colon3.75
pineal_day5.74
pineal_night4.62
retina4.575
small_intestine3.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15696_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.03 ± 0.34
Basal Forebrain8.09 ± 0.4
Basal Part of Pons8.25 ± 0.44
Cerebellar Cortex7.9 ± 0.4
Cerebellar Nuclei7.5 ± 0.32
Claustrum7.48 ± 0.34
Epithalamus8.46 ± 0.42
Frontal Lobe8.27 ± 0.46
Globus Pallidus7.01 ± 0.74
Hypothalamus9.46 ± 0.47
Insula8.35 ± 0.29
Limbic Lobe7.95 ± 0.51
Mesencephalon8 ± 0.63
Myelencephalon7.99 ± 0.65
Occipital Lobe7.42 ± 0.57
Parietal Lobe8 ± 0.51
Pontine Tegmentum7.99 ± 0.68
Striatum7.81 ± 0.63
Subthalamus8.27 ± 0.52
Temporal Lobe8.21 ± 0.45
Thalamus7.9 ± 0.44
White Matter5.75 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Drd1ipCBCerebellum47.42
55.72
Drd1ipCTXCerebral cortex100
100
Drd1ipHIPHippocampal region100
100
Drd1ipHPFHippocampal formation100
100
Drd1ipHYHypothalamus100
100
Drd1ipLSXLateral septal complex100
100
Drd1ipMBMidbrain100
100
Drd1ipMYMedulla100
100
Drd1ipOLFOlfactory bulb100
100
Drd1ipPPons100
100
Drd1ipPALPallidum100
100
Drd1ipRHPRetrohippocampal region100
100
Drd1ipsAMYStriatum-like amygdalar nuclei100
100
Drd1ipSTRStriatum100
100
Drd1ipSTRdStriatum dorsal region100
100
Drd1ipSTRvStriatum ventral region100
100
Drd1ipTHThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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