AutismKB 2.0

Annotation Detail for REG3A


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Basic Information Top
Gene Symbol:REG3A ( HIP,PAP,PAP-H,PAP1,PBCGF,REG-III,REG3 )
Gene Full Name: regenerating islet-derived 3 alpha
Band: 2p12
Quick LinksEntrez ID:5068; OMIM: 167805; Uniprot ID:REG3A_HUMAN; ENSEMBL ID: ENSG00000172016; HGNC ID: 8601
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult20 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal304 / 336030790
ovarian tumor0 / 766820 
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder49 / 297571646
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine95 / 234472405
kidney0 / 2117770 
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas36 / 214812167
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach145 / 966191500
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205815_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.7
Adipocyte4.5
AdrenalCortex5.05
Adrenalgland3.9
Amygdala4.8
Appendix4.8
AtrioventricularNode3.55
BDCA4+_DentriticCells5.05
Bonemarrow4.55
BronchialEpithelialCells4.6
CD105+_Endothelial4.7
CD14+_Monocytes4.95
CD19+_BCells(neg._sel.)4.85
CD33+_Myeloid5.9
CD34+5.9
CD4+_Tcells5.05
CD56+_NKCells5.6
CD71+_EarlyErythroid4.3
CD8+_Tcells4.5
CardiacMyocytes6.4
Caudatenucleus4.1
Cerebellum3.7
CerebellumPeduncles5.3
CiliaryGanglion3.3
CingulateCortex4.65
Colorectaladenocarcinoma4.6
DorsalRootGanglion3.5
FetalThyroid4.5
Fetalbrain4.65
Fetalliver4.05
Fetallung3.8
GlobusPallidus3.4
Heart6.25
Hypothalamus5.05
Kidney3.65
Leukemia_chronicMyelogenousK-5624.15
Leukemia_promyelocytic-HL-604.05
Leukemialymphoblastic(MOLT-4)3.7
Liver7.05
Lung5.1
Lymphnode4.05
Lymphoma_burkitts(Daudi)5.95
Lymphoma_burkitts(Raji)6.45
MedullaOblongata4.25
OccipitalLobe4.1
OlfactoryBulb3.6
Ovary3.1
Pancreas3039.35
PancreaticIslet9547.65
ParietalLobe4.9
Pituitary5.4
Placenta4.8
Pons4.4
PrefrontalCortex5.75
Prostate6.5
Salivarygland3.6
SkeletalMuscle5.65
Skin3.6
SmoothMuscle5.25
Spinalcord8
SubthalamicNucleus4.25
SuperiorCervicalGanglion5.1
TemporalLobe4.2
Testis3.95
TestisGermCell3.9
TestisIntersitial3.85
TestisLeydigCell4.6
TestisSeminiferousTubule3.95
Thalamus4.7
Thymus3.7
Thyroid5.7
Tongue4.55
Tonsil4.45
Trachea3.85
TrigeminalGanglion4.6
Uterus3.8
UterusCorpus4.25
WholeBlood5.05
Wholebrain3.8
colon4.65
pineal_day5.72
pineal_night5.64
retina5.525
small_intestine11203.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14785_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.33 ± 1.02
Basal Forebrain1.95 ± 0.22
Basal Part of Pons1.56 ± 0.36
Cerebellar Cortex1.79 ± 0.77
Cerebellar Nuclei2.22 ± 0.69
Claustrum2.85 ± 0.88
Epithalamus1.65 ± 0.64
Frontal Lobe1.71 ± 0.55
Globus Pallidus2.51 ± 0.31
Hypothalamus1.96 ± 0.59
Insula1.82 ± 0.59
Limbic Lobe1.96 ± 0.69
Mesencephalon2.06 ± 0.66
Myelencephalon1.95 ± 0.67
Occipital Lobe2.02 ± 0.67
Parietal Lobe1.98 ± 0.83
Pontine Tegmentum2.01 ± 0.69
Striatum2.11 ± 0.55
Subthalamus3.13 ± 1.92
Temporal Lobe1.83 ± 0.65
Thalamus1.86 ± 0.54
White Matter2.49 ± 0.31
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00140109 23 71 93 RPSGNLVSVLSGAEGSFVSSLVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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