AutismKB 2.0

Annotation Detail for NTM


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Basic Information Top
Gene Symbol:NTM ( HNT,IGLON2,MGC60329,NTRI )
Gene Full Name: neurotrimin
Band: 11q25
Quick LinksEntrez ID:50863; OMIM: 607938; Uniprot ID:NTRI_HUMAN; ENSEMBL ID: ENSG00000182667; HGNC ID: 17941
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst0 / 623190 
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma10 / 10688393
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal117 / 336030734
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow1 / 4880120
brain86 / 110098978
cervix0 / 481710 
connective tissue0 / 1492550 
ear3 / 16212185
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye25 / 211054118
heart1 / 8962611
intestine4 / 23447217
kidney5 / 21177723
larynx0 / 241450 
liver0 / 2077430 
lung28 / 33697483
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid5 / 20539243
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin7 / 21057433
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222020_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.55
Adipocyte12
AdrenalCortex17.5
Adrenalgland13.25
Amygdala32.5
Appendix21.25
AtrioventricularNode12.45
BDCA4+_DentriticCells11
Bonemarrow14.3
BronchialEpithelialCells15.1
CD105+_Endothelial12.9
CD14+_Monocytes14.35
CD19+_BCells(neg._sel.)11.5
CD33+_Myeloid15.9
CD34+15
CD4+_Tcells13.65
CD56+_NKCells13.65
CD71+_EarlyErythroid12.25
CD8+_Tcells11.15
CardiacMyocytes30.55
Caudatenucleus18.55
Cerebellum51.05
CerebellumPeduncles95.7
CiliaryGanglion11.2
CingulateCortex53.45
Colorectaladenocarcinoma12.9
DorsalRootGanglion14.65
FetalThyroid14.15
Fetalbrain37.15
Fetalliver12.45
Fetallung10.15
GlobusPallidus18.3
Heart20.55
Hypothalamus32.5
Kidney11.55
Leukemia_chronicMyelogenousK-56211.55
Leukemia_promyelocytic-HL-6010.95
Leukemialymphoblastic(MOLT-4)9
Liver22.1
Lung23.5
Lymphnode10.25
Lymphoma_burkitts(Daudi)17.2
Lymphoma_burkitts(Raji)22.1
MedullaOblongata33.15
OccipitalLobe46.35
OlfactoryBulb14.95
Ovary9.95
Pancreas11
PancreaticIslet12.45
ParietalLobe39
Pituitary15.7
Placenta12.8
Pons22
PrefrontalCortex70.25
Prostate15.7
Salivarygland12.15
SkeletalMuscle24.7
Skin13.75
SmoothMuscle15.9
Spinalcord32.4
SubthalamicNucleus23.85
SuperiorCervicalGanglion31.75
TemporalLobe34.15
Testis11.35
TestisGermCell9.35
TestisIntersitial12.35
TestisLeydigCell14.45
TestisSeminiferousTubule11.75
Thalamus17.6
Thymus8.6
Thyroid14.15
Tongue19.95
Tonsil13.25
Trachea10.9
TrigeminalGanglion15.1
Uterus9.65
UterusCorpus34.95
WholeBlood13.7
Wholebrain90.35
colon14.9
pineal_day104.78
pineal_night106.8
retina20.85
small_intestine13.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_934_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.95 ± 0.33
Basal Forebrain6.76 ± 0.18
Basal Part of Pons6.64 ± 0.2
Cerebellar Cortex7.19 ± 0.16
Cerebellar Nuclei6.79 ± 0.6
Claustrum6.01 ± 0.57
Epithalamus6.49 ± 0.52
Frontal Lobe6.82 ± 0.39
Globus Pallidus6.13 ± 0.29
Hypothalamus6.58 ± 0.33
Insula6.89 ± 0.31
Limbic Lobe6.63 ± 0.4
Mesencephalon6.62 ± 0.41
Myelencephalon6.75 ± 0.42
Occipital Lobe6.66 ± 0.32
Parietal Lobe6.8 ± 0.39
Pontine Tegmentum6.73 ± 0.51
Striatum6.14 ± 0.35
Subthalamus5.94 ± 0.54
Temporal Lobe6.9 ± 0.31
Thalamus6.98 ± 0.41
White Matter6.14 ± 0.53
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00077518 26 99 124 SIEIQNVDVYDEGPYTCSVQTDNHPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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