AutismKB 2.0

Annotation Detail for CDON


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Basic Information Top
Gene Symbol:CDON ( CDO,MGC111524,ORCAM )
Gene Full Name: Cdon homolog (mouse)
Band: 11q24.2
Quick LinksEntrez ID:50937; OMIM: 608707; Uniprot ID:CDON_HUMAN; ENSEMBL ID: ENSG00000064309; HGNC ID: 17104
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus19 / 56401233
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor8 / 26384530
glioma3 / 10688328
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal69 / 336030720
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue4 / 13106305
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow1 / 4880120
brain10 / 11009899
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye12 / 21105456
heart9 / 89626100
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node1 / 9161010
mammary gland4 / 15327126
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach2 / 9661920
testis14 / 33044242
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207230_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.45
Adipocyte5.6
AdrenalCortex6.05
Adrenalgland4.8
Amygdala5.95
Appendix6.9
AtrioventricularNode4.4
BDCA4+_DentriticCells5.85
Bonemarrow5.8
BronchialEpithelialCells5.6
CD105+_Endothelial5.7
CD14+_Monocytes6
CD19+_BCells(neg._sel.)5.75
CD33+_Myeloid7.15
CD34+7.15
CD4+_Tcells5.95
CD56+_NKCells6.5
CD71+_EarlyErythroid5.25
CD8+_Tcells5.1
CardiacMyocytes7.2
Caudatenucleus5.1
Cerebellum4.65
CerebellumPeduncles6.5
CiliaryGanglion4.1
CingulateCortex5.85
Colorectaladenocarcinoma5.65
DorsalRootGanglion4.4
FetalThyroid5.5
Fetalbrain5.65
Fetalliver4.9
Fetallung4.8
GlobusPallidus4.2
Heart7.15
Hypothalamus6.1
Kidney4.65
Leukemia_chronicMyelogenousK-5625.1
Leukemia_promyelocytic-HL-605
Leukemialymphoblastic(MOLT-4)4.55
Liver7.9
Lung6.15
Lymphnode6.5
Lymphoma_burkitts(Daudi)7.2
Lymphoma_burkitts(Raji)7.95
MedullaOblongata5.2
OccipitalLobe5.1
OlfactoryBulb4.5
Ovary3.8
Pancreas4.65
PancreaticIslet6.1
ParietalLobe6.4
Pituitary6.6
Placenta5.7
Pons5.45
PrefrontalCortex7.1
Prostate6.55
Salivarygland5.85
SkeletalMuscle7.45
Skin4.65
SmoothMuscle6.45
Spinalcord6.05
SubthalamicNucleus5.15
SuperiorCervicalGanglion7.6
TemporalLobe5.65
Testis4.85
TestisGermCell6.1
TestisIntersitial5.5
TestisLeydigCell5.7
TestisSeminiferousTubule4.9
Thalamus5.8
Thymus4.45
Thyroid7.05
Tongue5.8
Tonsil8.7
Trachea4.75
TrigeminalGanglion5.95
Uterus4.6
UterusCorpus5.65
WholeBlood6.1
Wholebrain4.75
colon5.65
pineal_day6.98
pineal_night6.9
retina6.8
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P98335
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.03 ± 0.63
Basal Forebrain3.67 ± 0.5
Basal Part of Pons4.1 ± 0.79
Cerebellar Cortex4.73 ± 0.4
Cerebellar Nuclei3.91 ± 0.55
Claustrum4.01 ± 0.71
Epithalamus3.65 ± 1.07
Frontal Lobe3.77 ± 0.69
Globus Pallidus2.81 ± 0.45
Hypothalamus3.8 ± 0.57
Insula3.65 ± 0.83
Limbic Lobe4.04 ± 0.65
Mesencephalon3.88 ± 0.7
Myelencephalon3.91 ± 0.65
Occipital Lobe4.39 ± 0.71
Parietal Lobe4.13 ± 0.65
Pontine Tegmentum3.76 ± 0.71
Striatum3.52 ± 0.88
Subthalamus4.31 ± 0.24
Temporal Lobe3.94 ± 0.63
Thalamus3.64 ± 0.71
White Matter2.21 ± 0.83
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CdonCBCerebellum3.64
5.74
CdonCTXCerebral cortex2.08
2.64
CdonHIPHippocampal region3.27
3.91
CdonHPFHippocampal formation2.99
2.94
CdonHYHypothalamus0.11
0.09
CdonLSXLateral septal complex0.49
0.38
CdonMBMidbrain0.5
1.03
CdonMYMedulla0.7
0.9
CdonOLFOlfactory bulb2.45
3.14
CdonPPons3.15
4.86
CdonPALPallidum0.01
0
CdonRHPRetrohippocampal region2.5
1.62
CdonsAMYStriatum-like amygdalar nuclei0.52
0.32
CdonSTRStriatum0.52
0.56
CdonSTRdStriatum dorsal region0.52
0.64
CdonSTRvStriatum ventral region0.46
0.44
CdonTHThalamus1.26
1.26
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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