AutismKB 2.0

Annotation Detail for PCDH7


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Basic Information Top
Gene Symbol:PCDH7 ( BH-Pcdh,BHPCDH )
Gene Full Name: protocadherin 7
Band: 4p15.1
Quick LinksEntrez ID:5099; OMIM: 602988; Uniprot ID:PCDH7_HUMAN; ENSEMBL ID: ENSG00000169851; HGNC ID: 8659
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst0 / 623190 
fetus25 / 56401244
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult42 / 193912121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor1 / 2638453
glioma4 / 10688337
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal78 / 336030723
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain24 / 110098921
cervix0 / 481710 
connective tissue2 / 14925513
ear4 / 16212246
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye5 / 21105423
heart4 / 8962644
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve3 / 15768190
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate12 / 18934563
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach2 / 9661920
testis3 / 3304429
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus14 / 23287860
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205535_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.5
Adipocyte7.35
AdrenalCortex8.9
Adrenalgland6.7
Amygdala7.9
Appendix9.15
AtrioventricularNode6.7
BDCA4+_DentriticCells8.15
Bonemarrow8.1
BronchialEpithelialCells7.55
CD105+_Endothelial7.85
CD14+_Monocytes8.55
CD19+_BCells(neg._sel.)8.25
CD33+_Myeloid9.65
CD34+9.45
CD4+_Tcells8
CD56+_NKCells9.1
CD71+_EarlyErythroid7.4
CD8+_Tcells7.4
CardiacMyocytes14.25
Caudatenucleus6.95
Cerebellum6.3
CerebellumPeduncles9.3
CiliaryGanglion7.1
CingulateCortex8.1
Colorectaladenocarcinoma7.7
DorsalRootGanglion7.25
FetalThyroid7.75
Fetalbrain7.5
Fetalliver6.85
Fetallung6.15
GlobusPallidus6.05
Heart13.4
Hypothalamus8.15
Kidney6.7
Leukemia_chronicMyelogenousK-5626.95
Leukemia_promyelocytic-HL-606.8
Leukemialymphoblastic(MOLT-4)5.65
Liver11.5
Lung8.35
Lymphnode6.2
Lymphoma_burkitts(Daudi)10.1
Lymphoma_burkitts(Raji)11.9
MedullaOblongata6.95
OccipitalLobe6.95
OlfactoryBulb6.05
Ovary5.8
Pancreas6.55
PancreaticIslet8.5
ParietalLobe8.55
Pituitary8.95
Placenta7.85
Pons7.7
PrefrontalCortex9.45
Prostate8.9
Salivarygland6.5
SkeletalMuscle10.1
Skin6.9
SmoothMuscle8.65
Spinalcord8.25
SubthalamicNucleus7.25
SuperiorCervicalGanglion9.95
TemporalLobe7.1
Testis6.5
TestisGermCell6.05
TestisIntersitial6.5
TestisLeydigCell7.8
TestisSeminiferousTubule6.65
Thalamus8.05
Thymus5.55
Thyroid9
Tongue8.35
Tonsil7.6
Trachea6.45
TrigeminalGanglion9
Uterus6.25
UterusCorpus7.95
WholeBlood8.1
Wholebrain5.75
colon7.75
pineal_day9.52
pineal_night9.44
retina9.35
small_intestine7.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P310921
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.54 ± 0.54
Basal Forebrain4.79 ± 0.57
Basal Part of Pons5.02 ± 0.43
Cerebellar Cortex4.02 ± 0.45
Cerebellar Nuclei4.12 ± 0.49
Claustrum4.71 ± 0.86
Epithalamus3.85 ± 0.57
Frontal Lobe4.55 ± 0.63
Globus Pallidus4.65 ± 0.66
Hypothalamus4.78 ± 1.02
Insula4.62 ± 0.5
Limbic Lobe4.95 ± 0.69
Mesencephalon5.05 ± 0.68
Myelencephalon4.88 ± 0.72
Occipital Lobe5.9 ± 0.79
Parietal Lobe5.2 ± 0.52
Pontine Tegmentum4.79 ± 0.77
Striatum5.21 ± 0.57
Subthalamus4.46 ± 0.3
Temporal Lobe4.94 ± 0.57
Thalamus4.72 ± 0.68
White Matter2.81 ± 1.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcdh7CBCerebellum1.32
1.91
Pcdh7CTXCerebral cortex20.32
15.02
Pcdh7HIPHippocampal region2.64
2.81
Pcdh7HPFHippocampal formation5.7
5.24
Pcdh7HYHypothalamus4.83
3.41
Pcdh7LSXLateral septal complex3.74
3.01
Pcdh7MBMidbrain11.33
9.98
Pcdh7MYMedulla8.65
8.95
Pcdh7OLFOlfactory bulb16.74
12.67
Pcdh7PPons3.96
4.11
Pcdh7PALPallidum5.8
4.76
Pcdh7RHPRetrohippocampal region10.12
8.07
Pcdh7sAMYStriatum-like amygdalar nuclei14.43
9.86
Pcdh7STRStriatum5.13
3.6
Pcdh7STRdStriatum dorsal region4.39
2.99
Pcdh7STRvStriatum ventral region3.29
2.59
Pcdh7THThalamus2.36
1.98
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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