AutismKB 2.0

Annotation Detail for ACOX1


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Basic Information Top
Gene Symbol:ACOX1 ( ACOX,MGC1198,PALMCOX,SCOX )
Gene Full Name: acyl-CoA oxidase 1, palmitoyl
Band: 17q25.1
Quick LinksEntrez ID:51; OMIM: 609751; Uniprot ID:ACOX1_HUMAN; ENSEMBL ID: ENSG00000161533; HGNC ID: 119
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst1 / 6231916
fetus56 / 56401299
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult142 / 193912173
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor16 / 26384560
glioma2 / 10688318
head and neck tumor15 / 136302110
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma1 / 7175513
non-neoplasia6 / 9725061
normal230 / 336030768
ovarian tumor5 / 7668265
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder5 / 29757168
blood4 / 12347832
bone6 / 7165583
bone marrow3 / 4880161
brain50 / 110098945
cervix1 / 4817120
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye11 / 21105452
heart9 / 89626100
intestine9 / 23447238
kidney12 / 21177756
larynx5 / 24145207
liver15 / 20774372
lung39 / 336974115
lymph0 / 442700 
lymph node2 / 9161021
mammary gland7 / 15327145
mouth9 / 67052134
muscle3 / 10771527
nerve1 / 1576863
ovary5 / 10205148
pancreas6 / 21481227
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta24 / 28082585
prostate10 / 18934552
salivary gland0 / 201550 
skin6 / 21057428
spleen3 / 5395255
stomach5 / 9661951
testis11 / 33044233
thymus7 / 8113186
thyroid2 / 4747342
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus15 / 23287864
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213501_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.1
Adipocyte7.5
AdrenalCortex8.4
Adrenalgland6.4
Amygdala8
Appendix12.8
AtrioventricularNode5.75
BDCA4+_DentriticCells8.35
Bonemarrow7.55
BronchialEpithelialCells8.3
CD105+_Endothelial7.45
CD14+_Monocytes10.7
CD19+_BCells(neg._sel.)8.15
CD33+_Myeloid18.45
CD34+9.6
CD4+_Tcells7.05
CD56+_NKCells8.75
CD71+_EarlyErythroid7
CD8+_Tcells6.45
CardiacMyocytes9.4
Caudatenucleus6.6
Cerebellum5.8
CerebellumPeduncles8.5
CiliaryGanglion6.85
CingulateCortex7.65
Colorectaladenocarcinoma6.75
DorsalRootGanglion5.8
FetalThyroid7.35
Fetalbrain7.5
Fetalliver6.5
Fetallung6.15
GlobusPallidus5.45
Heart9.45
Hypothalamus8
Kidney6.5
Leukemia_chronicMyelogenousK-5626.75
Leukemia_promyelocytic-HL-606.6
Leukemialymphoblastic(MOLT-4)5.8
Liver12
Lung8.35
Lymphnode6.05
Lymphoma_burkitts(Daudi)9.55
Lymphoma_burkitts(Raji)10.65
MedullaOblongata6.75
OccipitalLobe6.6
OlfactoryBulb5.75
Ovary5.25
Pancreas7.15
PancreaticIslet8.15
ParietalLobe7.85
Pituitary8.8
Placenta10.85
Pons7.35
PrefrontalCortex9.4
Prostate9.45
Salivarygland5.95
SkeletalMuscle8.65
Skin5.8
SmoothMuscle8.4
Spinalcord8
SubthalamicNucleus6.8
SuperiorCervicalGanglion8.7
TemporalLobe6.8
Testis5.95
TestisGermCell5.95
TestisIntersitial6.15
TestisLeydigCell7.5
TestisSeminiferousTubule6.5
Thalamus7.6
Thymus6.1
Thyroid9.55
Tongue9.45
Tonsil7.3
Trachea6.25
TrigeminalGanglion18.45
Uterus6.1
UterusCorpus7.35
WholeBlood132.4
Wholebrain6.4
colon17.3
pineal_day14.38
pineal_night18.56
retina9.025
small_intestine19.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P935889
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.86 ± 0.74
Basal Forebrain4.95 ± 0.53
Basal Part of Pons4.89 ± 0.72
Cerebellar Cortex4.74 ± 0.33
Cerebellar Nuclei4.76 ± 0.32
Claustrum4.61 ± 0.61
Epithalamus5.1 ± 0.66
Frontal Lobe5.09 ± 0.47
Globus Pallidus5.79 ± 0.49
Hypothalamus5.38 ± 0.29
Insula5.18 ± 0.32
Limbic Lobe4.73 ± 0.5
Mesencephalon5.1 ± 0.44
Myelencephalon4.96 ± 0.54
Occipital Lobe4.49 ± 0.51
Parietal Lobe5.01 ± 0.48
Pontine Tegmentum5.02 ± 0.55
Striatum5.15 ± 0.4
Subthalamus4.68 ± 0.49
Temporal Lobe5.07 ± 0.42
Thalamus5.22 ± 0.38
White Matter5.28 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Acox1CBCerebellum67.72
100
Acox1CTXCerebral cortex100
100
Acox1HIPHippocampal region100
100
Acox1HPFHippocampal formation100
100
Acox1HYHypothalamus100
100
Acox1LSXLateral septal complex100
100
Acox1MBMidbrain86.47
95.88
Acox1MYMedulla57.77
71.36
Acox1OLFOlfactory bulb97.17
100
Acox1PPons65.68
78.98
Acox1PALPallidum86.76
96.7
Acox1RHPRetrohippocampal region100
100
Acox1sAMYStriatum-like amygdalar nuclei100
100
Acox1STRStriatum100
95
Acox1STRdStriatum dorsal region96.63
89.6
Acox1STRvStriatum ventral region100
96.14
Acox1THThalamus96.42
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009221 15 379 393 AFTSWTANTGIEACR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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