AutismKB 2.0

Annotation Detail for SLC35C2


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Basic Information Top
Gene Symbol:SLC35C2 ( BA394O2.1,C20orf5,CGI-15,FLJ37039,FLJ46434,MGC20633,MGC32079,MGC39183,OVCOV1 )
Gene Full Name: solute carrier family 35, member C2
Band: 20q13.12
Quick LinksEntrez ID:51006; OMIM: NA; Uniprot ID:S35C2_HUMAN; ENSEMBL ID: ENSG00000080189; HGNC ID: 17117
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst5 / 6231980
fetus25 / 56401244
neonate4 / 31097128
infant6 / 23620254
juvenile6 / 55556107
adult214 / 1939121110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor11 / 94178116
cervical tumor3 / 3436687
chondrosarcoma7 / 8282384
colorectal tumor18 / 114246157
esophageal tumor5 / 17290289
gastrointestinal tumor17 / 119369142
germ cell tumor30 / 263845113
glioma13 / 106883121
head and neck tumor4 / 13630229
kidney tumor11 / 68959159
leukemia13 / 95842135
liver tumor8 / 9635983
lung tumor7 / 10312767
lymphoma9 / 71755125
non-neoplasia9 / 9725092
normal322 / 336030795
ovarian tumor6 / 7668278
pancreatic tumor23 / 104616219
primitive neuroectodermal tumor of the CNS35 / 125680278
prostate cancer18 / 102680175
retinoblastoma7 / 46356151
skin tumor28 / 124949224
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland6 / 33197180
ascites4 / 4001599
bladder3 / 29757100
blood25 / 123478202
bone7 / 7165597
bone marrow5 / 48801102
brain118 / 1100989107
cervix10 / 48171207
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus5 / 20209247
eye31 / 211054146
heart5 / 8962655
intestine29 / 234472123
kidney23 / 211777108
larynx1 / 2414541
liver13 / 20774362
lung15 / 33697444
lymph1 / 4427022
lymph node4 / 9161043
mammary gland16 / 153271104
mouth2 / 6705229
muscle2 / 10771518
nerve3 / 15768190
ovary11 / 102051107
pancreas26 / 214812121
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta44 / 280825156
prostate30 / 189345158
salivary gland1 / 2015549
skin37 / 210574175
spleen17 / 53952315
stomach15 / 96619155
testis27 / 33044281
thymus9 / 81131110
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord1 / 1368073
uterus19 / 23287881
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219447_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.2
Adipocyte7.7
AdrenalCortex7.9
Adrenalgland6.55
Amygdala8.35
Appendix7.7
AtrioventricularNode5.75
BDCA4+_DentriticCells13.95
Bonemarrow7.95
BronchialEpithelialCells7.6
CD105+_Endothelial7.65
CD14+_Monocytes9.1
CD19+_BCells(neg._sel.)8.35
CD33+_Myeloid14.85
CD34+10.15
CD4+_Tcells10.95
CD56+_NKCells8.85
CD71+_EarlyErythroid6.4
CD8+_Tcells10.75
CardiacMyocytes9.55
Caudatenucleus7
Cerebellum6.4
CerebellumPeduncles8.8
CiliaryGanglion5.25
CingulateCortex8
Colorectaladenocarcinoma16.55
DorsalRootGanglion6.5
FetalThyroid7.8
Fetalbrain7.55
Fetalliver6.7
Fetallung7.25
GlobusPallidus5.55
Heart9.65
Hypothalamus8.75
Kidney6.2
Leukemia_chronicMyelogenousK-5627.1
Leukemia_promyelocytic-HL-606.75
Leukemialymphoblastic(MOLT-4)6.4
Liver10.1
Lung9.9
Lymphnode6.9
Lymphoma_burkitts(Daudi)9.75
Lymphoma_burkitts(Raji)13.3
MedullaOblongata6.65
OccipitalLobe7.05
OlfactoryBulb6.2
Ovary5.65
Pancreas9.15
PancreaticIslet8.3
ParietalLobe8.05
Pituitary9.35
Placenta8.3
Pons7.05
PrefrontalCortex10.05
Prostate10.9
Salivarygland6.3
SkeletalMuscle8.5
Skin5.75
SmoothMuscle8.8
Spinalcord7.9
SubthalamicNucleus6.95
SuperiorCervicalGanglion8.6
TemporalLobe7.1
Testis6.95
TestisGermCell6.7
TestisIntersitial6.6
TestisLeydigCell7.65
TestisSeminiferousTubule6.8
Thalamus7.9
Thymus6.9
Thyroid10.25
Tongue7.75
Tonsil7.9
Trachea5.55
TrigeminalGanglion7.5
Uterus6.5
UterusCorpus6.8
WholeBlood9.05
Wholebrain6.8
colon7.55
pineal_day14.2
pineal_night22.6
retina9.6
small_intestine7.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P68452
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.74 ± 0.59
Basal Forebrain3.47 ± 0.62
Basal Part of Pons3.66 ± 0.93
Cerebellar Cortex3.83 ± 0.72
Cerebellar Nuclei3.58 ± 0.44
Claustrum3.66 ± 0.76
Epithalamus3.65 ± 0.82
Frontal Lobe3.82 ± 0.63
Globus Pallidus2.8 ± 0.76
Hypothalamus3.35 ± 0.53
Insula3.74 ± 0.72
Limbic Lobe3.51 ± 0.61
Mesencephalon3.68 ± 0.59
Myelencephalon3.71 ± 0.64
Occipital Lobe3.38 ± 0.53
Parietal Lobe3.69 ± 0.67
Pontine Tegmentum3.63 ± 0.54
Striatum3.53 ± 0.58
Subthalamus3.64 ± 0.28
Temporal Lobe3.82 ± 0.55
Thalamus3.84 ± 0.54
White Matter4.04 ± 0.11
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc35c2CBCerebellum33.65
25.59
Slc35c2CTXCerebral cortex63
38.75
Slc35c2HIPHippocampal region56.42
48.34
Slc35c2HPFHippocampal formation65.97
52.31
Slc35c2HYHypothalamus36.49
21.58
Slc35c2LSXLateral septal complex15.06
8.39
Slc35c2MBMidbrain39.71
28
Slc35c2MYMedulla50.24
42.18
Slc35c2OLFOlfactory bulb56.67
33.04
Slc35c2PPons45.06
37.14
Slc35c2PALPallidum31.46
22.06
Slc35c2RHPRetrohippocampal region83.05
57.38
Slc35c2sAMYStriatum-like amygdalar nuclei40.85
23.6
Slc35c2STRStriatum33.02
17.24
Slc35c2STRdStriatum dorsal region31.2
16.2
Slc35c2STRvStriatum ventral region45.79
21.65
Slc35c2THThalamus37.46
23.17
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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