Annotation Detail for PCDH9


Gene Symbol: | PCDH9 ( - ) |
---|---|
Gene Full Name: | protocadherin 9 |
Band: | 13q21.32 |
Quick Links | Entrez ID:5101; OMIM: 603581; Uniprot ID:PCDH9_HUMAN; ENSEMBL ID: ENSG00000184226; HGNC ID: 8661 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654709
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 11 / 564012 | 19 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 3 / 55556 | 53 | ![]() |
adult | 36 / 1939121 | 18 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 15 / 119369 | 125 | ![]() |
germ cell tumor | 2 / 263845 | 7 | ![]() |
glioma | 4 / 106883 | 37 | ![]() |
head and neck tumor | 1 / 136302 | 7 | ![]() |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 5 / 95842 | 52 | ![]() |
liver tumor | 2 / 96359 | 20 | ![]() |
lung tumor | 3 / 103127 | 29 | ![]() |
lymphoma | 3 / 71755 | 41 | ![]() |
non-neoplasia | 4 / 97250 | 41 | ![]() |
normal | 88 / 3360307 | 26 | ![]() |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 0 / 90257 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 1 / 123478 | 8 | ![]() |
bone | 1 / 71655 | 13 | ![]() |
bone marrow | 0 / 48801 | 0 | |
brain | 81 / 1100989 | 73 | ![]() |
cervix | 0 / 48171 | 0 | |
connective tissue | 0 / 149255 | 0 | |
ear | 2 / 16212 | 123 | ![]() |
embryonic tissue | 1 / 215722 | 4 | ![]() |
esophagus | 0 / 20209 | 0 | |
eye | 4 / 211054 | 18 | ![]() |
heart | 0 / 89626 | 0 | |
intestine | 14 / 234472 | 59 | ![]() |
kidney | 2 / 211777 | 9 | ![]() |
larynx | 0 / 24145 | 0 | |
liver | 2 / 207743 | 9 | ![]() |
lung | 3 / 336974 | 8 | ![]() |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 0 / 102051 | 0 | |
pancreas | 0 / 214812 | 0 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 1 / 280825 | 3 | ![]() |
prostate | 0 / 189345 | 0 | |
salivary gland | 0 / 20155 | 0 | |
skin | 1 / 210574 | 4 | ![]() |
spleen | 0 / 53952 | 0 | |
stomach | 1 / 96619 | 10 | ![]() |
testis | 2 / 330442 | 6 | ![]() |
thymus | 3 / 81131 | 36 | ![]() |
thyroid | 1 / 47473 | 21 | ![]() |
tonsil | 0 / 16999 | 0 | |
trachea | 1 / 52413 | 19 | ![]() |
umbilical cord | 0 / 13680 | 0 | |
uterus | 0 / 232878 | 0 | |
vascular | 2 / 51780 | 38 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219738_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 10.25 | ![]() |
Adipocyte | 8.75 | ![]() |
AdrenalCortex | 12.95 | ![]() |
Adrenalgland | 8.1 | ![]() |
Amygdala | 470.25 | ![]() |
Appendix | 12.7 | ![]() |
AtrioventricularNode | 9.85 | ![]() |
BDCA4+_DentriticCells | 8.2 | ![]() |
Bonemarrow | 9.3 | ![]() |
BronchialEpithelialCells | 8.3 | ![]() |
CD105+_Endothelial | 8.65 | ![]() |
CD14+_Monocytes | 9.4 | ![]() |
CD19+_BCells(neg._sel.) | 9.15 | ![]() |
CD33+_Myeloid | 10.65 | ![]() |
CD34+ | 11.05 | ![]() |
CD4+_Tcells | 9.15 | ![]() |
CD56+_NKCells | 9.7 | ![]() |
CD71+_EarlyErythroid | 8.7 | ![]() |
CD8+_Tcells | 7.95 | ![]() |
CardiacMyocytes | 15.65 | ![]() |
Caudatenucleus | 38.95 | ![]() |
Cerebellum | 8.95 | ![]() |
CerebellumPeduncles | 31.4 | ![]() |
CiliaryGanglion | 9.9 | ![]() |
CingulateCortex | 193.7 | ![]() |
Colorectaladenocarcinoma | 8.65 | ![]() |
DorsalRootGanglion | 10.2 | ![]() |
FetalThyroid | 8.9 | ![]() |
Fetalbrain | 36.95 | ![]() |
Fetalliver | 7.8 | ![]() |
Fetallung | 6.65 | ![]() |
GlobusPallidus | 84.15 | ![]() |
Heart | 13.9 | ![]() |
Hypothalamus | 153.8 | ![]() |
Kidney | 8.9 | ![]() |
Leukemia_chronicMyelogenousK-562 | 7.8 | ![]() |
Leukemia_promyelocytic-HL-60 | 7.8 | ![]() |
Leukemialymphoblastic(MOLT-4) | 6.7 | ![]() |
Liver | 14.2 | ![]() |
Lung | 9.55 | ![]() |
Lymphnode | 7.1 | ![]() |
Lymphoma_burkitts(Daudi) | 12.95 | ![]() |
Lymphoma_burkitts(Raji) | 13.45 | ![]() |
MedullaOblongata | 89.9 | ![]() |
OccipitalLobe | 182.2 | ![]() |
OlfactoryBulb | 23.4 | ![]() |
Ovary | 7.4 | ![]() |
Pancreas | 7.55 | ![]() |
PancreaticIslet | 9.5 | ![]() |
ParietalLobe | 211.3 | ![]() |
Pituitary | 10.5 | ![]() |
Placenta | 8.5 | ![]() |
Pons | 79.85 | ![]() |
PrefrontalCortex | 274.45 | ![]() |
Prostate | 9.9 | ![]() |
Salivarygland | 7.75 | ![]() |
SkeletalMuscle | 12.85 | ![]() |
Skin | 9.1 | ![]() |
SmoothMuscle | 9.95 | ![]() |
Spinalcord | 73.85 | ![]() |
SubthalamicNucleus | 102.6 | ![]() |
SuperiorCervicalGanglion | 15.45 | ![]() |
TemporalLobe | 57.6 | ![]() |
Testis | 7.45 | ![]() |
TestisGermCell | 6.85 | ![]() |
TestisIntersitial | 7.4 | ![]() |
TestisLeydigCell | 9.2 | ![]() |
TestisSeminiferousTubule | 7.55 | ![]() |
Thalamus | 103.7 | ![]() |
Thymus | 6.5 | ![]() |
Thyroid | 10.3 | ![]() |
Tongue | 10.65 | ![]() |
Tonsil | 9.15 | ![]() |
Trachea | 7.2 | ![]() |
TrigeminalGanglion | 10.65 | ![]() |
Uterus | 6.85 | ![]() |
UterusCorpus | 8.5 | ![]() |
WholeBlood | 9.35 | ![]() |
Wholebrain | 97.45 | ![]() |
colon | 8.65 | ![]() |
pineal_day | 11.96 | ![]() |
pineal_night | 10.74 | ![]() |
retina | 55.675 | ![]() |
small_intestine | 8.2 | ![]() |
- Probe name: A_24_P187218
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.9 ± 0.4 | ![]() ![]() ![]() |
Basal Forebrain | 10.35 ± 0.22 | ![]() ![]() ![]() |
Basal Part of Pons | 10.33 ± 0.34 | ![]() ![]() ![]() |
Cerebellar Cortex | 9.83 ± 0.24 | ![]() ![]() ![]() |
Cerebellar Nuclei | 10.3 ± 0.24 | ![]() ![]() ![]() |
Claustrum | 10.14 ± 0.53 | ![]() ![]() ![]() |
Epithalamus | 9.83 ± 0.61 | ![]() ![]() ![]() |
Frontal Lobe | 10.33 ± 0.38 | ![]() ![]() ![]() |
Globus Pallidus | 10.7 ± 0.35 | ![]() ![]() ![]() |
Hypothalamus | 10.03 ± 0.37 | ![]() ![]() ![]() |
Insula | 10.11 ± 0.24 | ![]() ![]() ![]() |
Limbic Lobe | 10.01 ± 0.4 | ![]() ![]() ![]() |
Mesencephalon | 10.15 ± 0.48 | ![]() ![]() ![]() |
Myelencephalon | 10.18 ± 0.46 | ![]() ![]() ![]() |
Occipital Lobe | 10.42 ± 0.4 | ![]() ![]() ![]() |
Parietal Lobe | 10.19 ± 0.42 | ![]() ![]() ![]() |
Pontine Tegmentum | 10.39 ± 0.35 | ![]() ![]() ![]() |
Striatum | 10 ± 0.46 | ![]() ![]() ![]() |
Subthalamus | 9.87 ± 0.07 | ![]() ![]() ![]() |
Temporal Lobe | 10.26 ± 0.43 | ![]() ![]() ![]() |
Thalamus | 10.52 ± 0.3 | ![]() ![]() ![]() |
White Matter | 11.5 ± 0.2 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Pcdh9 | CB | Cerebellum | 6.41 | ![]() |
6.77 | ![]() | |||
Pcdh9 | CTX | Cerebral cortex | 3.06 | ![]() |
2.09 | ![]() | |||
Pcdh9 | HIP | Hippocampal region | 8.38 | ![]() |
5.8 | ![]() | |||
Pcdh9 | HPF | Hippocampal formation | 8.91 | ![]() |
6.35 | ![]() | |||
Pcdh9 | HY | Hypothalamus | 3.16 | ![]() |
2.29 | ![]() | |||
Pcdh9 | LSX | Lateral septal complex | 0.69 | ![]() |
0.51 | ![]() | |||
Pcdh9 | MB | Midbrain | 4.36 | ![]() |
3.91 | ![]() | |||
Pcdh9 | MY | Medulla | 8.04 | ![]() |
8.06 | ![]() | |||
Pcdh9 | OLF | Olfactory bulb | 5.77 | ![]() |
4.2 | ![]() | |||
Pcdh9 | P | Pons | 4.71 | ![]() |
5.13 | ![]() | |||
Pcdh9 | PAL | Pallidum | 2.24 | ![]() |
2.13 | ![]() | |||
Pcdh9 | RHP | Retrohippocampal region | 9.68 | ![]() |
6.69 | ![]() | |||
Pcdh9 | sAMY | Striatum-like amygdalar nuclei | 2.93 | ![]() |
1.73 | ![]() | |||
Pcdh9 | STR | Striatum | 1.2 | ![]() |
0.89 | ![]() | |||
Pcdh9 | STRd | Striatum dorsal region | 0.74 | ![]() |
0.65 | ![]() | |||
Pcdh9 | STRv | Striatum ventral region | 2.18 | ![]() |
1.37 | ![]() | |||
Pcdh9 | TH | Thalamus | 8.89 | ![]() |
6.81 | ![]() |