Annotation Detail for TXNDC11
Basic Information Top
| Gene Symbol: | TXNDC11 ( EFP1 ) |
|---|---|
| Gene Full Name: | thioredoxin domain containing 11 |
| Band: | 16p13.13 |
| Quick Links | Entrez ID:51061; OMIM: NA; Uniprot ID:TXD11_HUMAN; ENSEMBL ID: ENSG00000153066; HGNC ID: 28030 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.313847
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 13 / 564012 | 23 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 7 / 55556 | 125 | |
| adult | 74 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 11 / 96359 | 114 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 100 / 3360307 | 29 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 8 / 48801 | 163 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 15 / 149255 | 100 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 1 / 89626 | 11 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 1 / 24145 | 41 | |
| liver | 15 / 207743 | 72 | |
| lung | 22 / 336974 | 65 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 4 / 210574 | 18 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 |  |
| testis | 16 / 330442 | 48 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P282031
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.09 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.02 ± 0.25 | |
| Basal Part of Pons | 4.56 ± 0.57 | |
| Cerebellar Cortex | 4.92 ± 0.34 | |
| Cerebellar Nuclei | 4.22 ± 0.53 | |
| Claustrum | 5.13 ± 0.54 | |
| Epithalamus | 4.64 ± 0.54 | |
| Frontal Lobe | 4.44 ± 0.53 | |
| Globus Pallidus | 4.59 ± 0.5 | |
| Hypothalamus | 4.27 ± 0.49 | |
| Insula | 4.46 ± 0.27 | |
| Limbic Lobe | 4.81 ± 0.5 | |
| Mesencephalon | 4.75 ± 0.54 | |
| Myelencephalon | 4.65 ± 0.5 | |
| Occipital Lobe | 5.13 ± 0.44 | |
| Parietal Lobe | 4.67 ± 0.47 | |
| Pontine Tegmentum | 4.66 ± 0.59 | |
| Striatum | 5.11 ± 0.44 | |
| Subthalamus | 4.14 ± 0.73 | |
| Temporal Lobe | 4.57 ± 0.54 | |
| Thalamus | 4.79 ± 0.42 | |
| White Matter | 5.04 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Txndc11 | CB | Cerebellum | 23.24 | |
| 31.07 | | |||
| Txndc11 | CTX | Cerebral cortex | 48.02 | |
| 35.96 | | |||
| Txndc11 | HIP | Hippocampal region | 40.07 | |
| 42.43 | | |||
| Txndc11 | HPF | Hippocampal formation | 43.41 | |
| 40.89 | | |||
| Txndc11 | HY | Hypothalamus | 39.66 | |
| 29.74 | | |||
| Txndc11 | LSX | Lateral septal complex | 20.36 | |
| 14.13 | | |||
| Txndc11 | MB | Midbrain | 21.32 | |
| 19.28 | | |||
| Txndc11 | MY | Medulla | 18.86 | |
| 21.54 | | |||
| Txndc11 | OLF | Olfactory bulb | 56.8 | |
| 48.35 | | |||
| Txndc11 | P | Pons | 21.48 | |
| 22.56 | | |||
| Txndc11 | PAL | Pallidum | 27.35 | |
| 23.54 | | |||
| Txndc11 | RHP | Retrohippocampal region | 52.68 | |
| 40.82 | | |||
| Txndc11 | sAMY | Striatum-like amygdalar nuclei | 51.62 | |
| 36.95 | | |||
| Txndc11 | STR | Striatum | 24.32 | |
| 16.86 | | |||
| Txndc11 | STRd | Striatum dorsal region | 17.16 | |
| 11.45 | | |||
| Txndc11 | STRv | Striatum ventral region | 34.65 | |
| 23.66 | | |||
| Txndc11 | TH | Thalamus | 29.33 | |
| 22.64 | |