AutismKB 2.0

Annotation Detail for NMD3


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Basic Information Top
Gene Symbol:NMD3 ( FLJ21053 )
Gene Full Name: NMD3 homolog (S. cerevisiae)
Band: 3q26.1
Quick LinksEntrez ID:51068; OMIM: 611021; Uniprot ID:NMD3_HUMAN; ENSEMBL ID: ENSG00000169251; HGNC ID: 24250
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst2 / 6231932
fetus32 / 56401256
neonate4 / 31097128
infant2 / 2362084
juvenile5 / 5555689
adult115 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma7 / 17475400
breast (mammary gland) tumor11 / 94178116
cervical tumor5 / 34366145
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor5 / 17290289
gastrointestinal tumor9 / 11936975
germ cell tumor28 / 263845106
glioma4 / 10688337
head and neck tumor21 / 136302154
kidney tumor5 / 6895972
leukemia14 / 95842146
liver tumor12 / 96359124
lung tumor4 / 10312738
lymphoma6 / 7175583
non-neoplasia6 / 9725061
normal224 / 336030766
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS12 / 12568095
prostate cancer8 / 10268077
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor10 / 12519179
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites8 / 40015199
bladder8 / 29757268
blood9 / 12347872
bone5 / 7165569
bone marrow11 / 48801225
brain97 / 110098988
cervix6 / 48171124
connective tissue12 / 14925580
ear3 / 16212185
embryonic tissue9 / 21572241
esophagus5 / 20209247
eye2 / 2110549
heart0 / 896260 
intestine10 / 23447242
kidney24 / 211777113
larynx0 / 241450 
liver16 / 20774377
lung11 / 33697432
lymph4 / 4427090
lymph node12 / 91610130
mammary gland23 / 153271150
mouth19 / 67052283
muscle6 / 10771555
nerve0 / 157680 
ovary2 / 10205119
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx5 / 41328120
pituitary gland0 / 165850 
placenta12 / 28082542
prostate12 / 18934563
salivary gland4 / 20155198
skin13 / 21057461
spleen11 / 53952203
stomach5 / 9661951
testis32 / 33044296
thymus8 / 8113198
thyroid2 / 4747342
tonsil0 / 169990 
trachea10 / 52413190
umbilical cord0 / 136800 
uterus20 / 23287885
vascular13 / 51780251
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218036_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts59.35
Adipocyte7.85
AdrenalCortex8.9
Adrenalgland6.55
Amygdala8.25
Appendix10.7
AtrioventricularNode7.5
BDCA4+_DentriticCells24.4
Bonemarrow7.85
BronchialEpithelialCells42.2
CD105+_Endothelial14.8
CD14+_Monocytes9.95
CD19+_BCells(neg._sel.)8.4
CD33+_Myeloid28.35
CD34+30.7
CD4+_Tcells9.1
CD56+_NKCells15.3
CD71+_EarlyErythroid7.55
CD8+_Tcells10.4
CardiacMyocytes14.1
Caudatenucleus6.65
Cerebellum6.35
CerebellumPeduncles8.95
CiliaryGanglion5.65
CingulateCortex8.05
Colorectaladenocarcinoma9
DorsalRootGanglion6.9
FetalThyroid11.9
Fetalbrain7.1
Fetalliver6.95
Fetallung6.45
GlobusPallidus6.1
Heart10.05
Hypothalamus8.35
Kidney6.4
Leukemia_chronicMyelogenousK-56210.8
Leukemia_promyelocytic-HL-609.25
Leukemialymphoblastic(MOLT-4)6.3
Liver10.35
Lung8
Lymphnode6.55
Lymphoma_burkitts(Daudi)10.3
Lymphoma_burkitts(Raji)14.05
MedullaOblongata7.6
OccipitalLobe7.05
OlfactoryBulb6.2
Ovary10.3
Pancreas7.5
PancreaticIslet8.5
ParietalLobe8.6
Pituitary9.4
Placenta7.5
Pons7.7
PrefrontalCortex9.4
Prostate8.5
Salivarygland16.95
SkeletalMuscle12.1
Skin7.75
SmoothMuscle11
Spinalcord8.35
SubthalamicNucleus7.25
SuperiorCervicalGanglion12.65
TemporalLobe7.4
Testis6.7
TestisGermCell6.7
TestisIntersitial8.2
TestisLeydigCell8.1
TestisSeminiferousTubule7.85
Thalamus7.95
Thymus5.65
Thyroid9.45
Tongue8.15
Tonsil8
Trachea6.5
TrigeminalGanglion8.75
Uterus10.2
UterusCorpus7.6
WholeBlood8.25
Wholebrain6.05
colon9.35
pineal_day9.56
pineal_night10.8
retina9.2
small_intestine7.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P32861
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.14 ± 0.34
Basal Forebrain7.24 ± 0.16
Basal Part of Pons6.92 ± 0.22
Cerebellar Cortex7.25 ± 0.31
Cerebellar Nuclei7.18 ± 0.28
Claustrum6.87 ± 0.42
Epithalamus7.4 ± 0.26
Frontal Lobe6.85 ± 0.39
Globus Pallidus7.46 ± 0.41
Hypothalamus7.42 ± 0.37
Insula6.78 ± 0.27
Limbic Lobe6.81 ± 0.4
Mesencephalon7.12 ± 0.29
Myelencephalon6.89 ± 0.36
Occipital Lobe7.3 ± 0.34
Parietal Lobe6.98 ± 0.33
Pontine Tegmentum7.02 ± 0.49
Striatum6.77 ± 0.4
Subthalamus7.24 ± 0.1
Temporal Lobe6.87 ± 0.36
Thalamus6.98 ± 0.33
White Matter7.22 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Nmd3CBCerebellum34.46
45.37
Nmd3CTXCerebral cortex84.52
64.46
Nmd3HIPHippocampal region54.61
67.49
Nmd3HPFHippocampal formation71.1
73.92
Nmd3HYHypothalamus11.4
8.38
Nmd3LSXLateral septal complex9.97
7.92
Nmd3MBMidbrain13.51
11.78
Nmd3MYMedulla8.76
10.22
Nmd3OLFOlfactory bulb44.38
37.59
Nmd3PPons10.89
11.43
Nmd3PALPallidum12.63
10.71
Nmd3RHPRetrohippocampal region95.2
81.5
Nmd3sAMYStriatum-like amygdalar nuclei45.58
31.31
Nmd3STRStriatum25.62
18.17
Nmd3STRdStriatum dorsal region28.1
20.24
Nmd3STRvStriatum ventral region15.63
10.51
Nmd3THThalamus22.55
16.88
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00028101 30 363 392 THLGHLLNPGDLVLGFDLANCNLNDEHVNK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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