AutismKB 2.0

Annotation Detail for MEMO1


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Basic Information Top
Gene Symbol:MEMO1 ( C2orf4,DKFZp434I0135,FLJ25031,MEMO,NS5ATP7 )
Gene Full Name: mediator of cell motility 1
Band: 2p22.3
Quick LinksEntrez ID:51072; OMIM: 611786; Uniprot ID:MEMO1_HUMAN; ENSEMBL ID: ENSG00000162959,ENSG00000162961; HGNC ID: 14014
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus22 / 56401239
neonate1 / 3109732
infant1 / 2362042
juvenile2 / 5555635
adult72 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor3 / 3436687
chondrosarcoma4 / 8282348
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor5 / 26384518
glioma8 / 10688374
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor2 / 10312719
lymphoma2 / 7175527
non-neoplasia7 / 9725071
normal98 / 336030729
ovarian tumor1 / 7668213
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer6 / 10268058
retinoblastoma3 / 4635664
skin tumor10 / 12494980
soft tissue/muscle tissue tumor29 / 125191231
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites4 / 4001599
bladder1 / 2975733
blood2 / 12347816
bone3 / 7165541
bone marrow0 / 488010 
brain26 / 110098923
cervix3 / 4817162
connective tissue25 / 149255167
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye10 / 21105447
heart3 / 8962633
intestine4 / 23447217
kidney6 / 21177728
larynx1 / 2414541
liver5 / 20774324
lung8 / 33697423
lymph0 / 442700 
lymph node3 / 9161032
mammary gland2 / 15327113
mouth0 / 670520 
muscle3 / 10771527
nerve1 / 1576863
ovary2 / 10205119
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta7 / 28082524
prostate9 / 18934547
salivary gland0 / 201550 
skin15 / 21057471
spleen0 / 539520 
stomach2 / 9661920
testis18 / 33044254
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219065_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts258.7
Adipocyte30.75
AdrenalCortex33.15
Adrenalgland43.45
Amygdala65.45
Appendix31.8
AtrioventricularNode20.35
BDCA4+_DentriticCells158.8
Bonemarrow50.4
BronchialEpithelialCells253.65
CD105+_Endothelial152.15
CD14+_Monocytes263.6
CD19+_BCells(neg._sel.)291.1
CD33+_Myeloid237.95
CD34+229
CD4+_Tcells109.9
CD56+_NKCells171.15
CD71+_EarlyErythroid28.45
CD8+_Tcells128
CardiacMyocytes36.4
Caudatenucleus22
Cerebellum21.25
CerebellumPeduncles24.35
CiliaryGanglion19.25
CingulateCortex28.45
Colorectaladenocarcinoma53.15
DorsalRootGanglion24.9
FetalThyroid28.55
Fetalbrain130.6
Fetalliver25.25
Fetallung48.5
GlobusPallidus20.15
Heart33.55
Hypothalamus32.35
Kidney21.65
Leukemia_chronicMyelogenousK-56273.25
Leukemia_promyelocytic-HL-60178.7
Leukemialymphoblastic(MOLT-4)131.45
Liver36.65
Lung30.55
Lymphnode40.9
Lymphoma_burkitts(Daudi)175.05
Lymphoma_burkitts(Raji)137.3
MedullaOblongata22.35
OccipitalLobe36.65
OlfactoryBulb20.75
Ovary18.95
Pancreas57.65
PancreaticIslet25.35
ParietalLobe27.55
Pituitary32.5
Placenta34.55
Pons24.95
PrefrontalCortex48.95
Prostate51.6
Salivarygland41.5
SkeletalMuscle30.1
Skin28.7
SmoothMuscle99.55
Spinalcord34.25
SubthalamicNucleus27.85
SuperiorCervicalGanglion42.75
TemporalLobe24.2
Testis421.1
TestisGermCell303.2
TestisIntersitial434.2
TestisLeydigCell177.1
TestisSeminiferousTubule165.6
Thalamus27.95
Thymus82.25
Thyroid49.55
Tongue33.6
Tonsil79.5
Trachea27.05
TrigeminalGanglion31.8
Uterus39.05
UterusCorpus28.2
WholeBlood107.9
Wholebrain40.3
colon61.15
pineal_day73.5
pineal_night56.26
retina42
small_intestine83.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P143880
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.17 ± 0.59
Basal Forebrain3.54 ± 0.39
Basal Part of Pons4.2 ± 0.45
Cerebellar Cortex4.06 ± 0.45
Cerebellar Nuclei3.85 ± 0.45
Claustrum3.85 ± 0.58
Epithalamus4.11 ± 0.54
Frontal Lobe4.19 ± 0.42
Globus Pallidus3.45 ± 0.54
Hypothalamus4.17 ± 0.37
Insula4.19 ± 0.39
Limbic Lobe4.08 ± 0.55
Mesencephalon4 ± 0.61
Myelencephalon4.04 ± 0.46
Occipital Lobe3.86 ± 0.53
Parietal Lobe4.07 ± 0.48
Pontine Tegmentum4.11 ± 0.51
Striatum3.67 ± 0.63
Subthalamus4.42 ± 0.45
Temporal Lobe4.29 ± 0.4
Thalamus3.94 ± 0.48
White Matter3.79 ± 0.44
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
0610016J10RikCBCerebellum67.82
67.79
0610016J10RikCTXCerebral cortex78.17
70.05
0610016J10RikHIPHippocampal region75.71
72.14
0610016J10RikHPFHippocampal formation75.73
71.1
0610016J10RikHYHypothalamus68.35
67.11
0610016J10RikLSXLateral septal complex68.71
67.17
0610016J10RikMBMidbrain67.95
67.24
0610016J10RikMYMedulla70.76
68.91
0610016J10RikOLFOlfactory bulb76.96
69.85
0610016J10RikPPons69.55
67.87
0610016J10RikPALPallidum68.59
67.19
0610016J10RikRHPRetrohippocampal region75.74
69.68
0610016J10RiksAMYStriatum-like amygdalar nuclei70.22
67.6
0610016J10RikSTRStriatum68.06
67.05
0610016J10RikSTRdStriatum dorsal region67.61
66.94
0610016J10RikSTRvStriatum ventral region68.36
67.13
0610016J10RikTHThalamus67.95
67.06
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
MEMO1_HUMAN_73 14 73 86 IFILGPSHHVPLSR PRIDE
PAp00032330 21 44 64 AIIAPHAGYTYCGSCAAHAYK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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