AutismKB 2.0

Annotation Detail for SIDT2


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Basic Information Top
Gene Symbol:SIDT2 ( DKFZp686L17253,FLJ90656 )
Gene Full Name: SID1 transmembrane family, member 2
Band: 11q23.3
Quick LinksEntrez ID:51092; OMIM: NA; Uniprot ID:SIDT2_HUMAN; ENSEMBL ID: ENSG00000149577; HGNC ID: 24272
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus30 / 56401253
neonate0 / 310970 
infant0 / 236200 
juvenile7 / 55556125
adult184 / 193912194
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor4 / 34366116
chondrosarcoma3 / 8282336
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor9 / 26384534
glioma2 / 10688318
head and neck tumor12 / 13630288
kidney tumor3 / 6895943
leukemia15 / 95842156
liver tumor6 / 9635962
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia12 / 97250123
normal234 / 336030769
ovarian tumor4 / 7668252
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood14 / 123478113
bone5 / 7165569
bone marrow0 / 488010 
brain74 / 110098967
cervix4 / 4817183
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye17 / 21105480
heart3 / 8962633
intestine18 / 23447276
kidney7 / 21177733
larynx2 / 2414582
liver6 / 20774328
lung18 / 33697453
lymph0 / 442700 
lymph node5 / 9161054
mammary gland19 / 153271123
mouth6 / 6705289
muscle1 / 1077159
nerve4 / 15768253
ovary4 / 10205139
pancreas15 / 21481269
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta35 / 280825124
prostate9 / 18934547
salivary gland0 / 201550 
skin1 / 2105744
spleen3 / 5395255
stomach3 / 9661931
testis52 / 330442157
thymus4 / 8113149
thyroid7 / 47473147
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus16 / 23287868
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 56256_at
Cell line Expression level Expression bar
721_B_lymphoblasts40.25
Adipocyte60.75
AdrenalCortex9.7
Adrenalgland50.6
Amygdala44.65
Appendix5.95
AtrioventricularNode4.85
BDCA4+_DentriticCells247.15
Bonemarrow16.2
BronchialEpithelialCells11.25
CD105+_Endothelial134.95
CD14+_Monocytes225.95
CD19+_BCells(neg._sel.)491.75
CD33+_Myeloid395.95
CD34+26.6
CD4+_Tcells21.5
CD56+_NKCells274.15
CD71+_EarlyErythroid21.75
CD8+_Tcells16.2
CardiacMyocytes7.05
Caudatenucleus24.9
Cerebellum32.05
CerebellumPeduncles25.9
CiliaryGanglion4.85
CingulateCortex15.5
Colorectaladenocarcinoma12.6
DorsalRootGanglion3.35
FetalThyroid58.2
Fetalbrain24.15
Fetalliver14.5
Fetallung40.65
GlobusPallidus3.35
Heart98.45
Hypothalamus61.15
Kidney12.65
Leukemia_chronicMyelogenousK-5627.15
Leukemia_promyelocytic-HL-6016.35
Leukemialymphoblastic(MOLT-4)3.8
Liver173.65
Lung369.55
Lymphnode74.5
Lymphoma_burkitts(Daudi)5
Lymphoma_burkitts(Raji)41.15
MedullaOblongata18.45
OccipitalLobe18.5
OlfactoryBulb61.85
Ovary25.95
Pancreas98.6
PancreaticIslet87
ParietalLobe13.8
Pituitary16.7
Placenta111.15
Pons9.45
PrefrontalCortex103.85
Prostate589.2
Salivarygland26.55
SkeletalMuscle4.25
Skin5.7
SmoothMuscle60
Spinalcord93.85
SubthalamicNucleus6.5
SuperiorCervicalGanglion6.2
TemporalLobe8.7
Testis152
TestisGermCell51.85
TestisIntersitial34.25
TestisLeydigCell11.65
TestisSeminiferousTubule24.25
Thalamus29.65
Thymus44.6
Thyroid87.6
Tongue4
Tonsil11.6
Trachea15.45
TrigeminalGanglion12.3
Uterus87.95
UterusCorpus15.1
WholeBlood159.8
Wholebrain85.95
colon57.1
pineal_day87.16
pineal_night72.52
retina75.275
small_intestine200.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1507_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.08 ± 0.91
Basal Forebrain2.27 ± 0.36
Basal Part of Pons2.21 ± 0.37
Cerebellar Cortex2.87 ± 0.63
Cerebellar Nuclei2.76 ± 0.69
Claustrum3.1 ± 0.5
Epithalamus2.48 ± 0.62
Frontal Lobe2.66 ± 0.64
Globus Pallidus2.67 ± 0.55
Hypothalamus2.67 ± 0.53
Insula2.48 ± 0.84
Limbic Lobe2.57 ± 0.68
Mesencephalon2.76 ± 0.82
Myelencephalon2.73 ± 0.64
Occipital Lobe2.34 ± 0.7
Parietal Lobe2.73 ± 0.7
Pontine Tegmentum2.63 ± 0.63
Striatum2.33 ± 0.61
Subthalamus2.62 ± 0.64
Temporal Lobe2.66 ± 0.65
Thalamus2.53 ± 0.63
White Matter3.88 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sidt2CBCerebellum18.8
26.86
Sidt2CTXCerebral cortex34.49
24.87
Sidt2HIPHippocampal region30.68
30.3
Sidt2HPFHippocampal formation38.38
34.19
Sidt2HYHypothalamus17.3
12.51
Sidt2LSXLateral septal complex10.55
8.22
Sidt2MBMidbrain11.67
11.8
Sidt2MYMedulla8.68
7.91
Sidt2OLFOlfactory bulb23.37
18.95
Sidt2PPons9.13
10.28
Sidt2PALPallidum12.04
9.78
Sidt2RHPRetrohippocampal region50.12
38.75
Sidt2sAMYStriatum-like amygdalar nuclei17.79
11.96
Sidt2STRStriatum9.78
6.73
Sidt2STRdStriatum dorsal region8.79
6.1
Sidt2STRvStriatum ventral region8.75
5.48
Sidt2THThalamus30.87
24.5
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00409225 9 77 85 GAPLLFVVR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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