AutismKB 2.0

Annotation Detail for RDH11


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Basic Information Top
Gene Symbol:RDH11 ( ARSDR1,CGI82,FLJ32633,HCBP12,MDT1,PSDR1,RALR1,SCALD,SDR7C1 )
Gene Full Name: retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Band: 14q24.1
Quick LinksEntrez ID:51109; OMIM: 607849; Uniprot ID:RDH11_HUMAN; ENSEMBL ID: ENSG00000072042; HGNC ID: 17964
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body11 / 70761155
blastocyst6 / 6231996
fetus81 / 564012143
neonate5 / 31097160
infant9 / 23620381
juvenile19 / 55556341
adult391 / 1939121201
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma8 / 17475457
breast (mammary gland) tumor38 / 94178403
cervical tumor4 / 34366116
chondrosarcoma7 / 8282384
colorectal tumor14 / 114246122
esophageal tumor7 / 17290404
gastrointestinal tumor9 / 11936975
germ cell tumor58 / 263845219
glioma24 / 106883224
head and neck tumor8 / 13630258
kidney tumor20 / 68959290
leukemia21 / 95842219
liver tumor19 / 96359197
lung tumor8 / 10312777
lymphoma0 / 717550 
non-neoplasia23 / 97250236
normal662 / 3360307197
ovarian tumor22 / 76682286
pancreatic tumor24 / 104616229
primitive neuroectodermal tumor of the CNS52 / 125680413
prostate cancer111 / 1026801081
retinoblastoma6 / 46356129
skin tumor37 / 124949296
soft tissue/muscle tissue tumor21 / 125191167
uterine tumor26 / 90257288
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue4 / 13106305
adrenal gland12 / 33197361
ascites5 / 40015124
bladder10 / 29757336
blood12 / 12347897
bone13 / 71655181
bone marrow18 / 48801368
brain259 / 1100989235
cervix11 / 48171228
connective tissue24 / 149255160
ear0 / 162120 
embryonic tissue30 / 215722139
esophagus7 / 20209346
eye23 / 211054108
heart26 / 89626290
intestine26 / 234472110
kidney65 / 211777306
larynx1 / 2414541
liver37 / 207743178
lung49 / 336974145
lymph0 / 442700 
lymph node2 / 9161021
mammary gland43 / 153271280
mouth4 / 6705259
muscle16 / 107715148
nerve3 / 15768190
ovary24 / 102051235
pancreas33 / 214812153
parathyroid7 / 20539340
pharynx11 / 41328266
pituitary gland2 / 16585120
placenta51 / 280825181
prostate264 / 1893451394
salivary gland6 / 20155297
skin52 / 210574246
spleen10 / 53952185
stomach20 / 96619206
testis44 / 330442133
thymus14 / 81131172
thyroid2 / 4747342
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord1 / 1368073
uterus40 / 232878171
vascular14 / 51780270
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217776_at
Cell line Expression level Expression bar
721_B_lymphoblasts263.9
Adipocyte58.1
AdrenalCortex53.15
Adrenalgland72.55
Amygdala317.6
Appendix27.9
AtrioventricularNode4.3
BDCA4+_DentriticCells97.25
Bonemarrow17
BronchialEpithelialCells313.1
CD105+_Endothelial45.6
CD14+_Monocytes97.7
CD19+_BCells(neg._sel.)38.9
CD33+_Myeloid103.25
CD34+97.95
CD4+_Tcells48.15
CD56+_NKCells130.15
CD71+_EarlyErythroid37.6
CD8+_Tcells66.15
CardiacMyocytes64.1
Caudatenucleus57.4
Cerebellum32.9
CerebellumPeduncles54.4
CiliaryGanglion16.3
CingulateCortex68.35
Colorectaladenocarcinoma91.75
DorsalRootGanglion33.35
FetalThyroid77.45
Fetalbrain161.25
Fetalliver195.25
Fetallung93.8
GlobusPallidus36.65
Heart7.75
Hypothalamus205.55
Kidney47.6
Leukemia_chronicMyelogenousK-56299.4
Leukemia_promyelocytic-HL-6094.8
Leukemialymphoblastic(MOLT-4)97.45
Liver54.7
Lung24.95
Lymphnode30.35
Lymphoma_burkitts(Daudi)36.65
Lymphoma_burkitts(Raji)196.2
MedullaOblongata54.4
OccipitalLobe92.75
OlfactoryBulb51.1
Ovary3.95
Pancreas27.7
PancreaticIslet81
ParietalLobe69.75
Pituitary77.3
Placenta24.55
Pons37.55
PrefrontalCortex140
Prostate3006.2
Salivarygland32.1
SkeletalMuscle5.55
Skin11.75
SmoothMuscle107.2
Spinalcord244.85
SubthalamicNucleus40.8
SuperiorCervicalGanglion5.4
TemporalLobe35.8
Testis28.5
TestisGermCell66
TestisIntersitial16.1
TestisLeydigCell28.25
TestisSeminiferousTubule30.8
Thalamus110.15
Thymus22.9
Thyroid475
Tongue11.15
Tonsil16.45
Trachea54.05
TrigeminalGanglion12.05
Uterus66.25
UterusCorpus29.35
WholeBlood71.35
Wholebrain122.65
colon78.15
pineal_day168.8
pineal_night156.06
retina289.975
small_intestine70
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8670_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.67 ± 0.37
Basal Forebrain6.61 ± 0.33
Basal Part of Pons6.76 ± 0.25
Cerebellar Cortex6.77 ± 0.28
Cerebellar Nuclei6.78 ± 0.37
Claustrum6.93 ± 0.51
Epithalamus6.37 ± 0.59
Frontal Lobe6.69 ± 0.33
Globus Pallidus7 ± 0.16
Hypothalamus6.61 ± 0.3
Insula6.53 ± 0.23
Limbic Lobe6.77 ± 0.43
Mesencephalon6.71 ± 0.43
Myelencephalon6.7 ± 0.37
Occipital Lobe6.85 ± 0.56
Parietal Lobe6.67 ± 0.3
Pontine Tegmentum6.65 ± 0.52
Striatum6.28 ± 0.37
Subthalamus6.94 ± 0.31
Temporal Lobe6.64 ± 0.34
Thalamus6.76 ± 0.29
White Matter7.64 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rdh11CBCerebellum17.26
77.58
Rdh11CTXCerebral cortex9.04
6.4
Rdh11HIPHippocampal region8.58
7.89
Rdh11HPFHippocampal formation8.53
7.16
Rdh11HYHypothalamus1.21
0.95
Rdh11LSXLateral septal complex0.94
0.66
Rdh11MBMidbrain3.74
3.73
Rdh11MYMedulla7.08
8.36
Rdh11OLFOlfactory bulb12.49
9.77
Rdh11PPons3.19
3.81
Rdh11PALPallidum3.35
3.43
Rdh11RHPRetrohippocampal region8.4
6.07
Rdh11sAMYStriatum-like amygdalar nuclei4.4
3.02
Rdh11STRStriatum3.07
2.59
Rdh11STRdStriatum dorsal region2.58
2.15
Rdh11STRvStriatum ventral region4.57
4.31
Rdh11THThalamus9.86
7.9
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002638 12 195 206 FYNAGLAYCHSK Peptide Atlas
RDH11_HUMAN_206 12 206 217 LANILFTQELAR PRIDE
RDH11_HUMAN_42 13 42 54 VVVVTGANTGIGK PRIDE
RDH11_HUMAN_83 14 83 96 EIQTTTGNQQVLVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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