Annotation Detail for SBDS
Basic Information Top
| Gene Symbol: | SBDS ( FLJ10917,SDS,SWDS ) |
|---|---|
| Gene Full Name: | Shwachman-Bodian-Diamond syndrome |
| Band: | 7q11.21 |
| Quick Links | Entrez ID:51119; OMIM: 607444; Uniprot ID:SBDS_HUMAN; ENSEMBL ID: ENSG00000126524; HGNC ID: 19440 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.110445
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 150 / 1939121 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 21 / 106883 | 196 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 212 / 3360307 | 63 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 13 / 124949 | 104 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 99 / 1100989 | 89 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 11 / 211054 | 52 | |
| heart | 9 / 89626 | 100 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 2 / 24145 | 82 | |
| liver | 10 / 207743 | 48 | |
| lung | 21 / 336974 | 62 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 32 / 214812 | 148 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 7 / 41328 | 169 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 32 / 280825 | 113 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 15 / 210574 | 71 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 10 / 96619 | 103 | |
| testis | 11 / 330442 | 33 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P70867
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.53 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.61 ± 0.14 | |
| Basal Part of Pons | 8.55 ± 0.23 | |
| Cerebellar Cortex | 8.47 ± 0.17 | |
| Cerebellar Nuclei | 8.85 ± 0.42 | |
| Claustrum | 8.51 ± 0.17 | |
| Epithalamus | 8.61 ± 0.45 | |
| Frontal Lobe | 8.71 ± 0.24 | |
| Globus Pallidus | 9.33 ± 0.19 | |
| Hypothalamus | 8.85 ± 0.18 | |
| Insula | 8.68 ± 0.24 | |
| Limbic Lobe | 8.61 ± 0.3 | |
| Mesencephalon | 8.78 ± 0.28 | |
| Myelencephalon | 8.66 ± 0.3 | |
| Occipital Lobe | 8.55 ± 0.36 | |
| Parietal Lobe | 8.64 ± 0.25 | |
| Pontine Tegmentum | 8.7 ± 0.26 | |
| Striatum | 8.72 ± 0.21 | |
| Subthalamus | 8.99 ± 0.26 | |
| Temporal Lobe | 8.6 ± 0.25 | |
| Thalamus | 8.68 ± 0.22 | |
| White Matter | 9.59 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sbds | CB | Cerebellum | 0 | |
| 0 | | |||
| Sbds | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| Sbds | HIP | Hippocampal region | 0 | |
| 0 | | |||
| Sbds | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| Sbds | HY | Hypothalamus | 0 | |
| 0 | | |||
| Sbds | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Sbds | MB | Midbrain | 0 | |
| 0 | | |||
| Sbds | MY | Medulla | 0 | |
| 0 | | |||
| Sbds | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| Sbds | P | Pons | 0 | |
| 0 | | |||
| Sbds | PAL | Pallidum | 0 | |
| 0 | | |||
| Sbds | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| Sbds | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| Sbds | STR | Striatum | 0 | |
| 0 | | |||
| Sbds | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| Sbds | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| Sbds | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001639 | 16 | 110 | 125 | DIATIVADKCVNPETK | Peptide Atlas |
| SBDS_HUMAN_1 | 10 | 1 | 10 | SIFTPTNQIR | PRIDE |
| SBDS_HUMAN_101 | 9 | 101 | 109 | HTQLEQMFR | PRIDE |
| SBDS_HUMAN_11 | 8 | 11 | 18 | LTNVAVVR | PRIDE |
| SBDS_HUMAN_2 | 10 | 2 | 11 | SIFTPTNQIR | PRIDE |