AutismKB 2.0

Annotation Detail for TRIM17


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TRIM17 ( RBCC,RNF16,terf )
Gene Full Name: tripartite motif-containing 17
Band: 1q42.13
Quick LinksEntrez ID:51127; OMIM: 606123; Uniprot ID:TRI17_HUMAN; ENSEMBL ID: ENSG00000162931; HGNC ID: 13430
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult13 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal53 / 336030715
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain42 / 110098938
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx1 / 2414541
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach0 / 966190 
testis16 / 33044248
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220279_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.15
Adipocyte6.25
AdrenalCortex7
Adrenalgland5.35
Amygdala6.6
Appendix6.35
AtrioventricularNode5.95
BDCA4+_DentriticCells6.9
Bonemarrow6.4
BronchialEpithelialCells6.2
CD105+_Endothelial6.4
CD14+_Monocytes6.7
CD19+_BCells(neg._sel.)6.75
CD33+_Myeloid7.65
CD34+7.65
CD4+_Tcells6.85
CD56+_NKCells7.5
CD71+_EarlyErythroid6.5
CD8+_Tcells6.05
CardiacMyocytes8.25
Caudatenucleus5.65
Cerebellum5.15
CerebellumPeduncles7.2
CiliaryGanglion6
CingulateCortex6.65
Colorectaladenocarcinoma6.35
DorsalRootGanglion5.15
FetalThyroid6.15
Fetalbrain6.35
Fetalliver5.5
Fetallung5.2
GlobusPallidus6
Heart8.2
Hypothalamus6.85
Kidney5.25
Leukemia_chronicMyelogenousK-5625.7
Leukemia_promyelocytic-HL-605.6
Leukemialymphoblastic(MOLT-4)5.1
Liver8.6
Lung6.9
Lymphnode5.45
Lymphoma_burkitts(Daudi)8.2
Lymphoma_burkitts(Raji)8.9
MedullaOblongata5.75
OccipitalLobe5.65
OlfactoryBulb5
Ovary4.15
Pancreas5.1
PancreaticIslet6.75
ParietalLobe6.75
Pituitary7.4
Placenta6.5
Pons6.05
PrefrontalCortex7.6
Prostate7.05
Salivarygland5.05
SkeletalMuscle8.15
Skin5.1
SmoothMuscle7.15
Spinalcord6.8
SubthalamicNucleus5.8
SuperiorCervicalGanglion7.25
TemporalLobe5.8
Testis6.35
TestisGermCell5.35
TestisIntersitial5.6
TestisLeydigCell6.35
TestisSeminiferousTubule5.9
Thalamus6.45
Thymus5
Thyroid7.45
Tongue6.3
Tonsil6.15
Trachea5.3
TrigeminalGanglion6.75
Uterus5
UterusCorpus5.7
WholeBlood6.7
Wholebrain5.35
colon6.35
pineal_day7.94
pineal_night7.76
retina7.625
small_intestine6.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P422667
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.67 ± 0.86
Basal Forebrain2.15 ± 0.31
Basal Part of Pons1.93 ± 0.38
Cerebellar Cortex2.85 ± 0.47
Cerebellar Nuclei2.46 ± 0.72
Claustrum2.84 ± 0.57
Epithalamus2.24 ± 0.8
Frontal Lobe2.35 ± 0.73
Globus Pallidus1.5 ± 0.61
Hypothalamus2.23 ± 0.79
Insula2.29 ± 0.66
Limbic Lobe2.45 ± 0.64
Mesencephalon2.41 ± 0.76
Myelencephalon2.31 ± 0.71
Occipital Lobe1.85 ± 0.67
Parietal Lobe2.22 ± 0.8
Pontine Tegmentum2.41 ± 0.73
Striatum2.47 ± 0.77
Subthalamus2.47 ± 0.72
Temporal Lobe2.47 ± 0.75
Thalamus2.12 ± 0.71
White Matter1.56 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Trim17CBCerebellum3.87
4.3
Trim17CTXCerebral cortex5.21
3.84
Trim17HIPHippocampal region3.71
3.2
Trim17HPFHippocampal formation3.67
2.82
Trim17HYHypothalamus4.27
3.22
Trim17LSXLateral septal complex2.13
1.58
Trim17MBMidbrain2.78
2.73
Trim17MYMedulla4
4.06
Trim17OLFOlfactory bulb10.25
7.12
Trim17PPons3.34
3.48
Trim17PALPallidum4.86
3.56
Trim17RHPRetrohippocampal region3.62
2.32
Trim17sAMYStriatum-like amygdalar nuclei5.26
3.14
Trim17STRStriatum5.47
3.37
Trim17STRdStriatum dorsal region5.79
3.65
Trim17STRvStriatum ventral region6.09
3.39
Trim17THThalamus4.81
4.04
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved