AutismKB 2.0

Annotation Detail for RLIM


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Basic Information Top
Gene Symbol:RLIM ( DKFZp686N06224,FLJ25923,FLJ41093,FLJ42887,FLJ45986,MGC15161,NY-REN-43,RNF12 )
Gene Full Name: ring finger protein, LIM domain interacting
Band: Xq13.2
Quick LinksEntrez ID:51132; OMIM: 300379; Uniprot ID:RNF12_HUMAN; ENSEMBL ID: ENSG00000131263; HGNC ID: 13429
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst11 / 62319176
fetus51 / 56401290
neonate0 / 310970 
infant0 / 236200 
juvenile6 / 55556107
adult149 / 193912176
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor16 / 94178169
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor23 / 26384587
glioma5 / 10688346
head and neck tumor5 / 13630236
kidney tumor3 / 6895943
leukemia8 / 9584283
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal224 / 336030766
ovarian tumor6 / 7668278
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer7 / 10268068
retinoblastoma5 / 46356107
skin tumor9 / 12494972
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor15 / 90257166
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites1 / 4001524
bladder1 / 2975733
blood9 / 12347872
bone1 / 7165513
bone marrow4 / 4880181
brain65 / 110098959
cervix0 / 481710 
connective tissue8 / 14925553
ear1 / 1621261
embryonic tissue20 / 21572292
esophagus0 / 202090 
eye17 / 21105480
heart15 / 89626167
intestine19 / 23447281
kidney15 / 21177770
larynx2 / 2414582
liver7 / 20774333
lung19 / 33697456
lymph1 / 4427022
lymph node3 / 9161032
mammary gland21 / 153271137
mouth2 / 6705229
muscle5 / 10771546
nerve0 / 157680 
ovary6 / 10205158
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland4 / 16585241
placenta10 / 28082535
prostate11 / 18934558
salivary gland0 / 201550 
skin15 / 21057471
spleen6 / 53952111
stomach12 / 96619124
testis15 / 33044245
thymus5 / 8113161
thyroid1 / 4747321
tonsil1 / 1699958
trachea2 / 5241338
umbilical cord2 / 13680146
uterus26 / 232878111
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215823_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts3359.85
Adipocyte3466.35
AdrenalCortex1136.35
Adrenalgland591.4
Amygdala632.1
Appendix1191.1
AtrioventricularNode461.45
BDCA4+_DentriticCells4620.4
Bonemarrow906.4
BronchialEpithelialCells3330.95
CD105+_Endothelial2344.55
CD14+_Monocytes6482.05
CD19+_BCells(neg._sel.)5737.05
CD33+_Myeloid5982.25
CD34+2815.6
CD4+_Tcells5688.65
CD56+_NKCells4119.95
CD71+_EarlyErythroid1508.75
CD8+_Tcells5056.25
CardiacMyocytes2474.45
Caudatenucleus429.2
Cerebellum708.95
CerebellumPeduncles892.1
CiliaryGanglion528.2
CingulateCortex516.3
Colorectaladenocarcinoma2096.4
DorsalRootGanglion543.75
FetalThyroid1934.2
Fetalbrain1701.45
Fetalliver1683.2
Fetallung1869.6
GlobusPallidus271.65
Heart461.85
Hypothalamus691.95
Kidney505
Leukemia_chronicMyelogenousK-5623845.8
Leukemia_promyelocytic-HL-604031.8
Leukemialymphoblastic(MOLT-4)3779.4
Liver1346.25
Lung1386.85
Lymphnode2665.65
Lymphoma_burkitts(Daudi)5642.1
Lymphoma_burkitts(Raji)9664.55
MedullaOblongata402.55
OccipitalLobe391.5
OlfactoryBulb1035.4
Ovary1205.75
Pancreas2628.05
PancreaticIslet1593.95
ParietalLobe471.6
Pituitary996.3
Placenta1552.4
Pons375.85
PrefrontalCortex942.45
Prostate2331.2
Salivarygland3012.3
SkeletalMuscle215.75
Skin1242.8
SmoothMuscle3569.35
Spinalcord930.95
SubthalamicNucleus378.75
SuperiorCervicalGanglion651.15
TemporalLobe317.9
Testis2241.75
TestisGermCell4189.2
TestisIntersitial5264
TestisLeydigCell3303.05
TestisSeminiferousTubule3442.2
Thalamus360.05
Thymus2216.9
Thyroid1818.6
Tongue2305.15
Tonsil3203.25
Trachea1798.25
TrigeminalGanglion650.35
Uterus1979
UterusCorpus998
WholeBlood4395.2
Wholebrain503.55
colon2107.55
pineal_day965.96
pineal_night772.04
retina1020.875
small_intestine1733.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P152673
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.25 ± 0.19
Basal Forebrain11.45 ± 0.1
Basal Part of Pons11.18 ± 0.12
Cerebellar Cortex11.26 ± 0.13
Cerebellar Nuclei11.31 ± 0.17
Claustrum11.2 ± 0.13
Epithalamus11.81 ± 0.26
Frontal Lobe10.98 ± 0.21
Globus Pallidus11.81 ± 0.19
Hypothalamus11.17 ± 0.49
Insula11.08 ± 0.15
Limbic Lobe11.04 ± 0.18
Mesencephalon11.22 ± 0.24
Myelencephalon11.13 ± 0.27
Occipital Lobe11.34 ± 0.2
Parietal Lobe11.08 ± 0.22
Pontine Tegmentum11.09 ± 0.26
Striatum11.57 ± 0.32
Subthalamus11.11 ± 0.18
Temporal Lobe11.13 ± 0.16
Thalamus11.01 ± 0.15
White Matter11.46 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rnf12CBCerebellum1.7
2.36
Rnf12CTXCerebral cortex1.41
1.21
Rnf12HIPHippocampal region3.43
3.02
Rnf12HPFHippocampal formation2.87
2.44
Rnf12HYHypothalamus0.45
0.31
Rnf12LSXLateral septal complex0.24
0.14
Rnf12MBMidbrain1.17
1.17
Rnf12MYMedulla2.17
2.59
Rnf12OLFOlfactory bulb1.5
1.93
Rnf12PPons1.42
1.53
Rnf12PALPallidum1.38
1.28
Rnf12RHPRetrohippocampal region1.96
1.44
Rnf12sAMYStriatum-like amygdalar nuclei0.12
0.07
Rnf12STRStriatum0.35
0.32
Rnf12STRdStriatum dorsal region0.41
0.42
Rnf12STRvStriatum ventral region0.31
0.21
Rnf12THThalamus1.25
1.36
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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