AutismKB 2.0

Annotation Detail for C3orf18


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Basic Information Top
Gene Symbol:C3orf18 ( G20 )
Gene Full Name: chromosome 3 open reading frame 18
Band: 3p21.31
Quick LinksEntrez ID:51161; OMIM: NA; Uniprot ID:CC018_HUMAN; ENSEMBL ID: ENSG00000088543; HGNC ID: 24837
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus16 / 56401228
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult38 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma2 / 10688318
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia4 / 9725041
normal98 / 336030729
ovarian tumor0 / 766820 
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow0 / 488010 
brain37 / 110098933
cervix1 / 4817120
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye6 / 21105428
heart5 / 8962655
intestine3 / 23447212
kidney5 / 21177723
larynx0 / 241450 
liver3 / 20774314
lung7 / 33697420
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth3 / 6705244
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas9 / 21481241
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach1 / 9661910
testis12 / 33044236
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219114_at
Cell line Expression level Expression bar
721_B_lymphoblasts26.15
Adipocyte23.95
AdrenalCortex25.2
Adrenalgland30.55
Amygdala18.55
Appendix30.3
AtrioventricularNode20.95
BDCA4+_DentriticCells14.8
Bonemarrow29.8
BronchialEpithelialCells12.45
CD105+_Endothelial15.2
CD14+_Monocytes17
CD19+_BCells(neg._sel.)20.05
CD33+_Myeloid22.9
CD34+21.85
CD4+_Tcells25.9
CD56+_NKCells22.2
CD71+_EarlyErythroid20.7
CD8+_Tcells22.6
CardiacMyocytes30.2
Caudatenucleus49.4
Cerebellum47.4
CerebellumPeduncles52.8
CiliaryGanglion18.4
CingulateCortex42.95
Colorectaladenocarcinoma16.7
DorsalRootGanglion21.6
FetalThyroid20.4
Fetalbrain23.4
Fetalliver19.05
Fetallung16.95
GlobusPallidus25.55
Heart41.05
Hypothalamus46.55
Kidney34.25
Leukemia_chronicMyelogenousK-56224.75
Leukemia_promyelocytic-HL-6021.45
Leukemialymphoblastic(MOLT-4)22.55
Liver30.2
Lung11.4
Lymphnode20.4
Lymphoma_burkitts(Daudi)35.75
Lymphoma_burkitts(Raji)27
MedullaOblongata33
OccipitalLobe34
OlfactoryBulb20.55
Ovary21.35
Pancreas17.3
PancreaticIslet24.4
ParietalLobe40.65
Pituitary46.6
Placenta18.55
Pons32.3
PrefrontalCortex25.2
Prostate18.25
Salivarygland20.6
SkeletalMuscle30.45
Skin20.55
SmoothMuscle16.45
Spinalcord35.75
SubthalamicNucleus32.9
SuperiorCervicalGanglion33.15
TemporalLobe45.95
Testis20.55
TestisGermCell18.8
TestisIntersitial26.85
TestisLeydigCell33.1
TestisSeminiferousTubule27.45
Thalamus50.3
Thymus15.55
Thyroid22.35
Tongue23.65
Tonsil24.05
Trachea30.9
TrigeminalGanglion27.2
Uterus15.3
UterusCorpus24.15
WholeBlood14.85
Wholebrain30.2
colon21.8
pineal_day55.02
pineal_night41.36
retina51.375
small_intestine16.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1181_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.15 ± 0.9
Basal Forebrain1.8 ± 0.47
Basal Part of Pons1.37 ± 0.48
Cerebellar Cortex2.27 ± 0.39
Cerebellar Nuclei1.93 ± 0.8
Claustrum2.3 ± 0.7
Epithalamus1.2 ± 0.71
Frontal Lobe1.41 ± 0.74
Globus Pallidus1.7 ± 0.85
Hypothalamus1.69 ± 0.77
Insula1.34 ± 0.88
Limbic Lobe1.53 ± 0.75
Mesencephalon1.83 ± 0.71
Myelencephalon1.71 ± 0.73
Occipital Lobe1.86 ± 0.81
Parietal Lobe1.69 ± 0.88
Pontine Tegmentum1.64 ± 0.73
Striatum1.55 ± 0.79
Subthalamus1.62 ± 0.73
Temporal Lobe1.54 ± 0.71
Thalamus1.65 ± 0.63
White Matter2.12 ± 0.63
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
6430571L13RikCBCerebellum3.85
7.15
6430571L13RikCTXCerebral cortex1.22
1.52
6430571L13RikHIPHippocampal region0.91
1.6
6430571L13RikHPFHippocampal formation0.89
1.38
6430571L13RikHYHypothalamus0.22
0.35
6430571L13RikLSXLateral septal complex0.93
1.24
6430571L13RikMBMidbrain0.97
1.36
6430571L13RikMYMedulla1.39
1.46
6430571L13RikOLFOlfactory bulb6.38
6.04
6430571L13RikPPons1.13
1.4
6430571L13RikPALPallidum0.7
0.54
6430571L13RikRHPRetrohippocampal region0.75
0.95
6430571L13RiksAMYStriatum-like amygdalar nuclei0.51
0.52
6430571L13RikSTRStriatum0.66
0.68
6430571L13RikSTRdStriatum dorsal region0.66
0.65
6430571L13RikSTRvStriatum ventral region0.69
0.69
6430571L13RikTHThalamus1.31
1.25
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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