AutismKB 2.0

Annotation Detail for C3orf19


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Basic Information Top
Gene Symbol:C3orf19 ( FLJ33839 )
Gene Full Name: chromosome 3 open reading frame 19
Band: 3p25.1
Quick LinksEntrez ID:51244; OMIM: NA; Uniprot ID:CC019_HUMAN; ENSEMBL ID: ENSG00000154781; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus27 / 56401247
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult78 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma8 / 8282396
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor7 / 26384526
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia3 / 9725030
normal93 / 336030727
ovarian tumor6 / 7668278
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites4 / 4001599
bladder0 / 297570 
blood3 / 12347824
bone5 / 7165569
bone marrow0 / 488010 
brain14 / 110098912
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye7 / 21105433
heart4 / 8962644
intestine10 / 23447242
kidney6 / 21177728
larynx0 / 241450 
liver4 / 20774319
lung19 / 33697456
lymph2 / 4427045
lymph node5 / 9161054
mammary gland4 / 15327126
mouth2 / 6705229
muscle4 / 10771537
nerve0 / 157680 
ovary8 / 10205178
pancreas2 / 2148129
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate7 / 18934536
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach2 / 9661920
testis4 / 33044212
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P144481
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.36 ± 0.22
Basal Forebrain8.28 ± 0.26
Basal Part of Pons8.04 ± 0.18
Cerebellar Cortex8.22 ± 0.21
Cerebellar Nuclei8.35 ± 0.12
Claustrum8.4 ± 0.35
Epithalamus8.24 ± 0.23
Frontal Lobe8.14 ± 0.23
Globus Pallidus8.55 ± 0.12
Hypothalamus8.11 ± 0.23
Insula8.26 ± 0.25
Limbic Lobe8.21 ± 0.25
Mesencephalon8.3 ± 0.23
Myelencephalon8.22 ± 0.26
Occipital Lobe8.47 ± 0.29
Parietal Lobe8.27 ± 0.22
Pontine Tegmentum8.27 ± 0.27
Striatum8.31 ± 0.21
Subthalamus8.22 ± 0.34
Temporal Lobe8.15 ± 0.21
Thalamus8.32 ± 0.17
White Matter9.05 ± 0.17
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
C130022K22RikCBCerebellum6.97
7.72
C130022K22RikCTXCerebral cortex12.33
8.46
C130022K22RikHIPHippocampal region10.43
10.53
C130022K22RikHPFHippocampal formation13.93
12.67
C130022K22RikHYHypothalamus1.58
1.22
C130022K22RikLSXLateral septal complex0.15
0.1
C130022K22RikMBMidbrain6.19
5.63
C130022K22RikMYMedulla15.63
15.88
C130022K22RikOLFOlfactory bulb20.17
14.92
C130022K22RikPPons8.33
8.19
C130022K22RikPALPallidum2.56
2.03
C130022K22RikRHPRetrohippocampal region19.28
15.27
C130022K22RiksAMYStriatum-like amygdalar nuclei3.72
2.84
C130022K22RikSTRStriatum4.62
3.29
C130022K22RikSTRdStriatum dorsal region4.56
3.31
C130022K22RikSTRvStriatum ventral region6.67
4.29
C130022K22RikTHThalamus2.61
2.07
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018