Annotation Detail for NT5C3
Basic Information Top
| Gene Symbol: | NT5C3 ( MGC27337,MGC87109,MGC87828,P5'N-1,PN-I,PSN1,UMPH,UMPH1,cN-III ) |
|---|---|
| Gene Full Name: | 5'-nucleotidase, cytosolic III |
| Band: | 7p14.3 |
| Quick Links | Entrez ID:51251; OMIM: 606224; Uniprot ID:5NT3_HUMAN; ENSEMBL ID: ENSG00000122643; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.487933
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 51 / 1939121 | 26 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 111 / 3360307 | 33 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 4 / 29757 | 134 | |
| blood | 8 / 123478 | 64 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 4 / 89626 | 44 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 1 / 153271 | 6 |  |
| mouth | 2 / 67052 | 29 | |
| muscle | 15 / 107715 | 139 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 17 / 214812 | 79 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 4 / 210574 | 18 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 3 / 96619 | 31 | |
| testis | 9 / 330442 | 27 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_7714_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.42 ± 0.2 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.19 ± 0.21 | |
| Basal Part of Pons | 7.23 ± 0.12 | |
| Cerebellar Cortex | 7.58 ± 0.19 | |
| Cerebellar Nuclei | 7.17 ± 0.15 | |
| Claustrum | 7.02 ± 0.37 | |
| Epithalamus | 7.55 ± 0.18 | |
| Frontal Lobe | 7.39 ± 0.25 | |
| Globus Pallidus | 7.06 ± 0.14 | |
| Hypothalamus | 7.46 ± 0.22 | |
| Insula | 7.37 ± 0.32 | |
| Limbic Lobe | 7.32 ± 0.3 | |
| Mesencephalon | 7.26 ± 0.3 | |
| Myelencephalon | 7.3 ± 0.3 | |
| Occipital Lobe | 7.22 ± 0.23 | |
| Parietal Lobe | 7.3 ± 0.23 | |
| Pontine Tegmentum | 7.38 ± 0.26 | |
| Striatum | 7.19 ± 0.25 | |
| Subthalamus | 7.37 ± 0.26 | |
| Temporal Lobe | 7.41 ± 0.26 | |
| Thalamus | 7.3 ± 0.22 | |
| White Matter | 7.42 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nt5c3 | CB | Cerebellum | 46.93 | |
| 84.07 | | |||
| Nt5c3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Nt5c3 | HIP | Hippocampal region | 76.32 | |
| 100 | | |||
| Nt5c3 | HPF | Hippocampal formation | 72.32 | |
| 100 | | |||
| Nt5c3 | HY | Hypothalamus | 81.1 | |
| 73.25 | | |||
| Nt5c3 | LSX | Lateral septal complex | 76.57 | |
| 65.73 | | |||
| Nt5c3 | MB | Midbrain | 84.12 | |
| 86.01 | | |||
| Nt5c3 | MY | Medulla | 66.79 | |
| 82.66 | | |||
| Nt5c3 | OLF | Olfactory bulb | 78.79 | |
| 74.64 | | |||
| Nt5c3 | P | Pons | 63.07 | |
| 76.69 | | |||
| Nt5c3 | PAL | Pallidum | 74.63 | |
| 72.61 | | |||
| Nt5c3 | RHP | Retrohippocampal region | 65.83 | |
| 62.36 | | |||
| Nt5c3 | sAMY | Striatum-like amygdalar nuclei | 75.1 | |
| 60.08 | | |||
| Nt5c3 | STR | Striatum | 67.4 | |
| 52.66 | | |||
| Nt5c3 | STRd | Striatum dorsal region | 62.73 | |
| 49.09 | | |||
| Nt5c3 | STRv | Striatum ventral region | 74.53 | |
| 53.85 | | |||
| Nt5c3 | TH | Thalamus | 91.92 | |
| 89.69 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00032784 | 12 | 103 | 114 | CPTCHNIIDNCK | Peptide Atlas |