AutismKB 2.0

Annotation Detail for PIPOX


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Basic Information Top
Gene Symbol:PIPOX ( LPIPOX )
Gene Full Name: pipecolic acid oxidase
Band: 17q11.2
Quick LinksEntrez ID:51268; OMIM: NA; Uniprot ID:SOX_HUMAN; ENSEMBL ID: ENSG00000179761; HGNC ID: 17804
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst3 / 6231948
fetus13 / 56401223
neonate1 / 3109732
infant0 / 236200 
juvenile9 / 55556161
adult27 / 193912113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor0 / 1193690 
germ cell tumor10 / 26384537
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor28 / 96359290
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal97 / 336030728
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor15 / 125191119
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain45 / 110098940
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye3 / 21105414
heart0 / 896260 
intestine1 / 2344724
kidney33 / 211777155
larynx0 / 241450 
liver50 / 207743240
lung0 / 3369740 
lymph1 / 4427022
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle15 / 107715139
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221605_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts16.8
Adipocyte20.95
AdrenalCortex29.45
Adrenalgland21.95
Amygdala27.2
Appendix33.8
AtrioventricularNode29.65
BDCA4+_DentriticCells16.55
Bonemarrow26.1
BronchialEpithelialCells20.3
CD105+_Endothelial20.4
CD14+_Monocytes17.55
CD19+_BCells(neg._sel.)17.25
CD33+_Myeloid21.85
CD34+21.65
CD4+_Tcells16.8
CD56+_NKCells23
CD71+_EarlyErythroid19.5
CD8+_Tcells15
CardiacMyocytes39.45
Caudatenucleus27.55
Cerebellum34.75
CerebellumPeduncles29.3
CiliaryGanglion26.95
CingulateCortex27.1
Colorectaladenocarcinoma21.35
DorsalRootGanglion33.15
FetalThyroid20.7
Fetalbrain21.9
Fetalliver47.25
Fetallung22.25
GlobusPallidus18.45
Heart33.2
Hypothalamus26.45
Kidney67.95
Leukemia_chronicMyelogenousK-56220.15
Leukemia_promyelocytic-HL-6017.95
Leukemialymphoblastic(MOLT-4)17.4
Liver860.15
Lung22.45
Lymphnode19.15
Lymphoma_burkitts(Daudi)29.15
Lymphoma_burkitts(Raji)35.8
MedullaOblongata21.65
OccipitalLobe20.6
OlfactoryBulb17.05
Ovary19.45
Pancreas17.5
PancreaticIslet23.55
ParietalLobe30.2
Pituitary26.85
Placenta18.7
Pons28.95
PrefrontalCortex27.85
Prostate22.6
Salivarygland21.75
SkeletalMuscle44.4
Skin24.45
SmoothMuscle23.8
Spinalcord25.3
SubthalamicNucleus22.55
SuperiorCervicalGanglion38.35
TemporalLobe23.75
Testis20.3
TestisGermCell18.3
TestisIntersitial20.05
TestisLeydigCell30.75
TestisSeminiferousTubule21.95
Thalamus29.25
Thymus15.8
Thyroid22.95
Tongue25.1
Tonsil24
Trachea19.7
TrigeminalGanglion44.45
Uterus15.55
UterusCorpus24.4
WholeBlood21.2
Wholebrain18.3
colon18.65
pineal_day26.4
pineal_night31.44
retina43.85
small_intestine22.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14807_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.36 ± 0.98
Basal Forebrain4.18 ± 0.31
Basal Part of Pons2.81 ± 0.67
Cerebellar Cortex3.69 ± 0.53
Cerebellar Nuclei4.26 ± 0.82
Claustrum3.55 ± 0.97
Epithalamus4.5 ± 0.58
Frontal Lobe3.46 ± 0.85
Globus Pallidus5.79 ± 0.55
Hypothalamus4.12 ± 0.39
Insula3 ± 0.94
Limbic Lobe3.23 ± 0.84
Mesencephalon3.9 ± 0.78
Myelencephalon3.75 ± 0.89
Occipital Lobe4.04 ± 0.79
Parietal Lobe3.83 ± 0.74
Pontine Tegmentum4.04 ± 0.49
Striatum3.78 ± 0.8
Subthalamus4.12 ± 0.33
Temporal Lobe3.32 ± 0.71
Thalamus4.14 ± 0.59
White Matter3.76 ± 0.85
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PipoxCBCerebellum8.25
9.04
PipoxCTXCerebral cortex6.97
4.45
PipoxHIPHippocampal region7.53
8.1
PipoxHPFHippocampal formation10.81
10.26
PipoxHYHypothalamus5.97
4.64
PipoxLSXLateral septal complex6.67
5.24
PipoxMBMidbrain3.61
3.13
PipoxMYMedulla11.85
13.95
PipoxOLFOlfactory bulb13.53
10.42
PipoxPPons10.65
11.6
PipoxPALPallidum6.27
4.44
PipoxRHPRetrohippocampal region18.95
14.96
PipoxsAMYStriatum-like amygdalar nuclei6.66
4.48
PipoxSTRStriatum8.93
5.9
PipoxSTRdStriatum dorsal region10.25
6.34
PipoxSTRvStriatum ventral region7.52
6.5
PipoxTHThalamus3.55
2.49
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00756180 14 290 303 TDIGDVQILSSFVR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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