Annotation Detail for ERGIC2
Basic Information Top
Gene Symbol: | ERGIC2 ( Erv41,MGC111152,PTX1,cd002 ) |
---|---|
Gene Full Name: | ERGIC and golgi 2 |
Band: | 12p11.22 |
Quick Links | Entrez ID:51290; OMIM: 612236; Uniprot ID:ERGI2_HUMAN; ENSEMBL ID: ENSG00000087502; HGNC ID: 30208 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.339453
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 7 / 70761 | 98 | |
blastocyst | 3 / 62319 | 48 | |
fetus | 16 / 564012 | 28 | |
neonate | 0 / 31097 | 0 | |
infant | 3 / 23620 | 127 | |
juvenile | 2 / 55556 | 35 | |
adult | 94 / 1939121 | 48 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 3 / 12794 | 234 | |
bladder carcinoma | 4 / 17475 | 228 | |
breast (mammary gland) tumor | 6 / 94178 | 63 | |
cervical tumor | 2 / 34366 | 58 | |
chondrosarcoma | 5 / 82823 | 60 | |
colorectal tumor | 2 / 114246 | 17 | |
esophageal tumor | 4 / 17290 | 231 | |
gastrointestinal tumor | 1 / 119369 | 8 | |
germ cell tumor | 12 / 263845 | 45 | |
glioma | 2 / 106883 | 18 | |
head and neck tumor | 5 / 136302 | 36 | |
kidney tumor | 8 / 68959 | 116 | |
leukemia | 5 / 95842 | 52 | |
liver tumor | 5 / 96359 | 51 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 4 / 71755 | 55 | |
non-neoplasia | 5 / 97250 | 51 | |
normal | 179 / 3360307 | 53 | |
ovarian tumor | 3 / 76682 | 39 | |
pancreatic tumor | 2 / 104616 | 19 | |
primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
prostate cancer | 8 / 102680 | 77 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 3 / 124949 | 24 | |
soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
uterine tumor | 8 / 90257 | 88 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 1 / 13106 | 76 | |
adrenal gland | 4 / 33197 | 120 | |
ascites | 0 / 40015 | 0 | |
bladder | 2 / 29757 | 67 | |
blood | 4 / 123478 | 32 | |
bone | 6 / 71655 | 83 | |
bone marrow | 3 / 48801 | 61 | |
brain | 45 / 1100989 | 40 | |
cervix | 2 / 48171 | 41 | |
connective tissue | 3 / 149255 | 20 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 15 / 215722 | 69 | |
esophagus | 4 / 20209 | 197 | |
eye | 3 / 211054 | 14 | |
heart | 3 / 89626 | 33 | |
intestine | 7 / 234472 | 29 | |
kidney | 22 / 211777 | 103 | |
larynx | 0 / 24145 | 0 | |
liver | 9 / 207743 | 43 | |
lung | 17 / 336974 | 50 | |
lymph | 0 / 44270 | 0 | |
lymph node | 3 / 91610 | 32 | |
mammary gland | 8 / 153271 | 52 | |
mouth | 0 / 67052 | 0 | |
muscle | 5 / 107715 | 46 | |
nerve | 0 / 15768 | 0 | |
ovary | 8 / 102051 | 78 | |
pancreas | 4 / 214812 | 18 | |
parathyroid | 4 / 20539 | 194 | |
pharynx | 7 / 41328 | 169 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 35 / 280825 | 124 | |
prostate | 13 / 189345 | 68 | |
salivary gland | 1 / 20155 | 49 | |
skin | 7 / 210574 | 33 | |
spleen | 2 / 53952 | 37 | |
stomach | 4 / 96619 | 41 | |
testis | 14 / 330442 | 42 | |
thymus | 2 / 81131 | 24 | |
thyroid | 6 / 47473 | 126 | |
tonsil | 0 / 16999 | 0 | |
trachea | 1 / 52413 | 19 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 10 / 232878 | 42 | |
vascular | 5 / 51780 | 96 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218135_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 273.45 | |
Adipocyte | 47.75 | |
AdrenalCortex | 18.7 | |
Adrenalgland | 11.05 | |
Amygdala | 24.65 | |
Appendix | 17.2 | |
AtrioventricularNode | 14.05 | |
BDCA4+_DentriticCells | 129.25 | |
Bonemarrow | 12.25 | |
BronchialEpithelialCells | 167.5 | |
CD105+_Endothelial | 77.1 | |
CD14+_Monocytes | 39.4 | |
CD19+_BCells(neg._sel.) | 99.8 | |
CD33+_Myeloid | 54.15 | |
CD34+ | 83.4 | |
CD4+_Tcells | 78.9 | |
CD56+_NKCells | 95.75 | |
CD71+_EarlyErythroid | 17.55 | |
CD8+_Tcells | 96.05 | |
CardiacMyocytes | 51.4 | |
Caudatenucleus | 14.45 | |
Cerebellum | 10.65 | |
CerebellumPeduncles | 18.7 | |
CiliaryGanglion | 11 | |
CingulateCortex | 51.15 | |
Colorectaladenocarcinoma | 20.4 | |
DorsalRootGanglion | 13.75 | |
FetalThyroid | 17.35 | |
Fetalbrain | 17.1 | |
Fetalliver | 13.25 | |
Fetallung | 12.65 | |
GlobusPallidus | 14.2 | |
Heart | 20.25 | |
Hypothalamus | 34.7 | |
Kidney | 10.75 | |
Leukemia_chronicMyelogenousK-562 | 18.35 | |
Leukemia_promyelocytic-HL-60 | 26.9 | |
Leukemialymphoblastic(MOLT-4) | 14.9 | |
Liver | 18.3 | |
Lung | 10.85 | |
Lymphnode | 15.05 | |
Lymphoma_burkitts(Daudi) | 20.35 | |
Lymphoma_burkitts(Raji) | 20.3 | |
MedullaOblongata | 17.95 | |
OccipitalLobe | 36.9 | |
OlfactoryBulb | 53.7 | |
Ovary | 17.2 | |
Pancreas | 26.9 | |
PancreaticIslet | 44.35 | |
ParietalLobe | 19.8 | |
Pituitary | 20.15 | |
Placenta | 18.75 | |
Pons | 16.85 | |
PrefrontalCortex | 37.5 | |
Prostate | 18.85 | |
Salivarygland | 10.45 | |
SkeletalMuscle | 20.55 | |
Skin | 13.65 | |
SmoothMuscle | 142.05 | |
Spinalcord | 18.35 | |
SubthalamicNucleus | 16.2 | |
SuperiorCervicalGanglion | 20.25 | |
TemporalLobe | 17.3 | |
Testis | 13.4 | |
TestisGermCell | 78.55 | |
TestisIntersitial | 71.65 | |
TestisLeydigCell | 36.3 | |
TestisSeminiferousTubule | 28.15 | |
Thalamus | 15.2 | |
Thymus | 8.3 | |
Thyroid | 23.6 | |
Tongue | 20.85 | |
Tonsil | 20 | |
Trachea | 17.15 | |
TrigeminalGanglion | 18.2 | |
Uterus | 15.45 | |
UterusCorpus | 15.9 | |
WholeBlood | 29.5 | |
Wholebrain | 15.6 | |
colon | 18.7 | |
pineal_day | 58.12 | |
pineal_night | 57.54 | |
retina | 21.025 | |
small_intestine | 13.95 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_6525_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 6.66 ± 0.35 | |
Basal Forebrain | 6.75 ± 0.15 | |
Basal Part of Pons | 6.62 ± 0.23 | |
Cerebellar Cortex | 6.72 ± 0.33 | |
Cerebellar Nuclei | 6.66 ± 0.35 | |
Claustrum | 6.71 ± 0.42 | |
Epithalamus | 6.76 ± 0.41 | |
Frontal Lobe | 6.78 ± 0.33 | |
Globus Pallidus | 6.69 ± 0.38 | |
Hypothalamus | 6.82 ± 0.3 | |
Insula | 6.71 ± 0.29 | |
Limbic Lobe | 6.65 ± 0.37 | |
Mesencephalon | 6.64 ± 0.43 | |
Myelencephalon | 6.65 ± 0.37 | |
Occipital Lobe | 6.58 ± 0.42 | |
Parietal Lobe | 6.72 ± 0.31 | |
Pontine Tegmentum | 6.7 ± 0.43 | |
Striatum | 6.63 ± 0.29 | |
Subthalamus | 6.77 ± 0.23 | |
Temporal Lobe | 6.72 ± 0.3 | |
Thalamus | 6.7 ± 0.26 | |
White Matter | 7.37 ± 0.19 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00040882 | 22 | 217 | 238 | IDHLSFGELVPAIINPLDGTEK | Peptide Atlas |