Annotation Detail for SPG21


Gene Symbol: | SPG21 ( ACP33,GL010,MASPARDIN,MAST ) |
---|---|
Gene Full Name: | spastic paraplegia 21 (autosomal recessive, Mast syndrome) |
Band: | 15q22.31 |
Quick Links | Entrez ID:51324; OMIM: 608181; Uniprot ID:SPG21_HUMAN; ENSEMBL ID: ENSG00000090487; HGNC ID: 20373 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.242458
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 6 / 70761 | 84 | ![]() |
blastocyst | 1 / 62319 | 16 | ![]() |
fetus | 43 / 564012 | 76 | ![]() |
neonate | 2 / 31097 | 64 | ![]() |
infant | 3 / 23620 | 127 | ![]() |
juvenile | 4 / 55556 | 71 | ![]() |
adult | 220 / 1939121 | 113 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 14 / 94178 | 148 | ![]() |
cervical tumor | 9 / 34366 | 261 | ![]() |
chondrosarcoma | 4 / 82823 | 48 | ![]() |
colorectal tumor | 13 / 114246 | 113 | ![]() |
esophageal tumor | 4 / 17290 | 231 | ![]() |
gastrointestinal tumor | 5 / 119369 | 41 | ![]() |
germ cell tumor | 16 / 263845 | 60 | ![]() |
glioma | 7 / 106883 | 65 | ![]() |
head and neck tumor | 37 / 136302 | 271 | ![]() |
kidney tumor | 4 / 68959 | 58 | ![]() |
leukemia | 11 / 95842 | 114 | ![]() |
liver tumor | 8 / 96359 | 83 | ![]() |
lung tumor | 8 / 103127 | 77 | ![]() |
lymphoma | 5 / 71755 | 69 | ![]() |
non-neoplasia | 6 / 97250 | 61 | ![]() |
normal | 259 / 3360307 | 77 | ![]() |
ovarian tumor | 7 / 76682 | 91 | ![]() |
pancreatic tumor | 11 / 104616 | 105 | ![]() |
primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | ![]() |
prostate cancer | 8 / 102680 | 77 | ![]() |
retinoblastoma | 3 / 46356 | 64 | ![]() |
skin tumor | 7 / 124949 | 56 | ![]() |
soft tissue/muscle tissue tumor | 13 / 125191 | 103 | ![]() |
uterine tumor | 3 / 90257 | 33 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 3 / 13106 | 228 | ![]() |
adrenal gland | 2 / 33197 | 60 | ![]() |
ascites | 2 / 40015 | 49 | ![]() |
bladder | 1 / 29757 | 33 | ![]() |
blood | 5 / 123478 | 40 | ![]() |
bone | 14 / 71655 | 195 | ![]() |
bone marrow | 9 / 48801 | 184 | ![]() |
brain | 67 / 1100989 | 60 | ![]() |
cervix | 9 / 48171 | 186 | ![]() |
connective tissue | 8 / 149255 | 53 | ![]() |
ear | 1 / 16212 | 61 | ![]() |
embryonic tissue | 13 / 215722 | 60 | ![]() |
esophagus | 4 / 20209 | 197 | ![]() |
eye | 18 / 211054 | 85 | ![]() |
heart | 7 / 89626 | 78 | ![]() |
intestine | 19 / 234472 | 81 | ![]() |
kidney | 9 / 211777 | 42 | ![]() |
larynx | 8 / 24145 | 331 | ![]() |
liver | 13 / 207743 | 62 | ![]() |
lung | 30 / 336974 | 89 | ![]() |
lymph | 2 / 44270 | 45 | ![]() |
lymph node | 5 / 91610 | 54 | ![]() |
mammary gland | 18 / 153271 | 117 | ![]() |
mouth | 3 / 67052 | 44 | ![]() |
muscle | 5 / 107715 | 46 | ![]() |
nerve | 2 / 15768 | 126 | ![]() |
ovary | 11 / 102051 | 107 | ![]() |
pancreas | 27 / 214812 | 125 | ![]() |
parathyroid | 5 / 20539 | 243 | ![]() |
pharynx | 5 / 41328 | 120 | ![]() |
pituitary gland | 4 / 16585 | 241 | ![]() |
placenta | 44 / 280825 | 156 | ![]() |
prostate | 16 / 189345 | 84 | ![]() |
salivary gland | 1 / 20155 | 49 | ![]() |
skin | 11 / 210574 | 52 | ![]() |
spleen | 0 / 53952 | 0 | |
stomach | 5 / 96619 | 51 | ![]() |
testis | 15 / 330442 | 45 | ![]() |
thymus | 3 / 81131 | 36 | ![]() |
thyroid | 23 / 47473 | 484 | ![]() |
tonsil | 1 / 16999 | 58 | ![]() |
trachea | 0 / 52413 | 0 | |
umbilical cord | 2 / 13680 | 146 | ![]() |
uterus | 14 / 232878 | 60 | ![]() |
vascular | 2 / 51780 | 38 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 217827_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 808.35 | ![]() |
Adipocyte | 187.05 | ![]() |
AdrenalCortex | 55.95 | ![]() |
Adrenalgland | 205.8 | ![]() |
Amygdala | 167.55 | ![]() |
Appendix | 67.6 | ![]() |
AtrioventricularNode | 21.95 | ![]() |
BDCA4+_DentriticCells | 617.05 | ![]() |
Bonemarrow | 162.6 | ![]() |
BronchialEpithelialCells | 330.35 | ![]() |
CD105+_Endothelial | 182.05 | ![]() |
CD14+_Monocytes | 1558.55 | ![]() |
CD19+_BCells(neg._sel.) | 712.9 | ![]() |
CD33+_Myeloid | 1515.95 | ![]() |
CD34+ | 547.6 | ![]() |
CD4+_Tcells | 250.15 | ![]() |
CD56+_NKCells | 479.65 | ![]() |
CD71+_EarlyErythroid | 61.85 | ![]() |
CD8+_Tcells | 175.55 | ![]() |
CardiacMyocytes | 91.2 | ![]() |
Caudatenucleus | 84.5 | ![]() |
Cerebellum | 64.5 | ![]() |
CerebellumPeduncles | 66.15 | ![]() |
CiliaryGanglion | 41.1 | ![]() |
CingulateCortex | 65.65 | ![]() |
Colorectaladenocarcinoma | 99.05 | ![]() |
DorsalRootGanglion | 42.05 | ![]() |
FetalThyroid | 192.9 | ![]() |
Fetalbrain | 77.75 | ![]() |
Fetalliver | 46.7 | ![]() |
Fetallung | 210.6 | ![]() |
GlobusPallidus | 42.15 | ![]() |
Heart | 115.15 | ![]() |
Hypothalamus | 179.85 | ![]() |
Kidney | 231.1 | ![]() |
Leukemia_chronicMyelogenousK-562 | 226.7 | ![]() |
Leukemia_promyelocytic-HL-60 | 384.4 | ![]() |
Leukemialymphoblastic(MOLT-4) | 170.15 | ![]() |
Liver | 602.95 | ![]() |
Lung | 617.95 | ![]() |
Lymphnode | 172.8 | ![]() |
Lymphoma_burkitts(Daudi) | 314.1 | ![]() |
Lymphoma_burkitts(Raji) | 666.8 | ![]() |
MedullaOblongata | 66.9 | ![]() |
OccipitalLobe | 67.9 | ![]() |
OlfactoryBulb | 168.9 | ![]() |
Ovary | 50.55 | ![]() |
Pancreas | 82.55 | ![]() |
PancreaticIslet | 261.75 | ![]() |
ParietalLobe | 70.55 | ![]() |
Pituitary | 179.6 | ![]() |
Placenta | 581.3 | ![]() |
Pons | 58.05 | ![]() |
PrefrontalCortex | 157.35 | ![]() |
Prostate | 265.4 | ![]() |
Salivarygland | 80.05 | ![]() |
SkeletalMuscle | 46.25 | ![]() |
Skin | 51.65 | ![]() |
SmoothMuscle | 161.7 | ![]() |
Spinalcord | 202.1 | ![]() |
SubthalamicNucleus | 60.85 | ![]() |
SuperiorCervicalGanglion | 58.1 | ![]() |
TemporalLobe | 50.15 | ![]() |
Testis | 220.35 | ![]() |
TestisGermCell | 224.7 | ![]() |
TestisIntersitial | 49.7 | ![]() |
TestisLeydigCell | 66.35 | ![]() |
TestisSeminiferousTubule | 61.5 | ![]() |
Thalamus | 79.75 | ![]() |
Thymus | 205.6 | ![]() |
Thyroid | 507.65 | ![]() |
Tongue | 81.15 | ![]() |
Tonsil | 104.2 | ![]() |
Trachea | 123.6 | ![]() |
TrigeminalGanglion | 30.45 | ![]() |
Uterus | 174.45 | ![]() |
UterusCorpus | 74.8 | ![]() |
WholeBlood | 800.45 | ![]() |
Wholebrain | 153.35 | ![]() |
colon | 209.4 | ![]() |
pineal_day | 322.98 | ![]() |
pineal_night | 311.92 | ![]() |
retina | 434.1 | ![]() |
small_intestine | 308.4 | ![]() |
- Probe name: A_23_P147450
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 8.1 ± 0.36 | ![]() ![]() ![]() |
Basal Forebrain | 8.53 ± 0.09 | ![]() ![]() ![]() |
Basal Part of Pons | 8.51 ± 0.22 | ![]() ![]() ![]() |
Cerebellar Cortex | 8.22 ± 0.14 | ![]() ![]() ![]() |
Cerebellar Nuclei | 8.7 ± 0.16 | ![]() ![]() ![]() |
Claustrum | 8.21 ± 0.35 | ![]() ![]() ![]() |
Epithalamus | 8.79 ± 0.25 | ![]() ![]() ![]() |
Frontal Lobe | 8.48 ± 0.24 | ![]() ![]() ![]() |
Globus Pallidus | 8.89 ± 0.09 | ![]() ![]() ![]() |
Hypothalamus | 8.68 ± 0.23 | ![]() ![]() ![]() |
Insula | 8.38 ± 0.16 | ![]() ![]() ![]() |
Limbic Lobe | 8.36 ± 0.3 | ![]() ![]() ![]() |
Mesencephalon | 8.39 ± 0.27 | ![]() ![]() ![]() |
Myelencephalon | 8.42 ± 0.3 | ![]() ![]() ![]() |
Occipital Lobe | 8.13 ± 0.33 | ![]() ![]() ![]() |
Parietal Lobe | 8.39 ± 0.25 | ![]() ![]() ![]() |
Pontine Tegmentum | 8.45 ± 0.27 | ![]() ![]() ![]() |
Striatum | 8.63 ± 0.21 | ![]() ![]() ![]() |
Subthalamus | 8.71 ± 0.04 | ![]() ![]() ![]() |
Temporal Lobe | 8.44 ± 0.27 | ![]() ![]() ![]() |
Thalamus | 8.36 ± 0.21 | ![]() ![]() ![]() |
White Matter | 9.16 ± 0.08 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Spg21 | CB | Cerebellum | 13.97 | ![]() |
17.9 | ![]() | |||
Spg21 | CTX | Cerebral cortex | 24.52 | ![]() |
18.11 | ![]() | |||
Spg21 | HIP | Hippocampal region | 25.69 | ![]() |
35.06 | ![]() | |||
Spg21 | HPF | Hippocampal formation | 20.55 | ![]() |
24.16 | ![]() | |||
Spg21 | HY | Hypothalamus | 3.77 | ![]() |
2.86 | ![]() | |||
Spg21 | LSX | Lateral septal complex | 34.42 | ![]() |
29.87 | ![]() | |||
Spg21 | MB | Midbrain | 7.32 | ![]() |
6.7 | ![]() | |||
Spg21 | MY | Medulla | 8.59 | ![]() |
9.43 | ![]() | |||
Spg21 | OLF | Olfactory bulb | 17.05 | ![]() |
13 | ![]() | |||
Spg21 | P | Pons | 6.32 | ![]() |
6.53 | ![]() | |||
Spg21 | PAL | Pallidum | 8.94 | ![]() |
8.46 | ![]() | |||
Spg21 | RHP | Retrohippocampal region | 13.3 | ![]() |
11 | ![]() | |||
Spg21 | sAMY | Striatum-like amygdalar nuclei | 21.61 | ![]() |
20.17 | ![]() | |||
Spg21 | STR | Striatum | 23.16 | ![]() |
17.31 | ![]() | |||
Spg21 | STRd | Striatum dorsal region | 21.73 | ![]() |
15.75 | ![]() | |||
Spg21 | STRv | Striatum ventral region | 24.06 | ![]() |
15.65 | ![]() | |||
Spg21 | TH | Thalamus | 6.55 | ![]() |
6.87 | ![]() |