AutismKB 2.0

Annotation Detail for PCYOX1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:PCYOX1 ( KIAA0908,PCL1 )
Gene Full Name: prenylcysteine oxidase 1
Band: 2p13.3
Quick LinksEntrez ID:51449; OMIM: 610995; Uniprot ID:PCYOX_HUMAN; ENSEMBL ID: ENSG00000116005; HGNC ID: 20588
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst4 / 6231964
fetus79 / 564012140
neonate2 / 3109764
infant1 / 2362042
juvenile8 / 55556143
adult169 / 193912187
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma9 / 82823108
colorectal tumor11 / 11424696
esophageal tumor4 / 17290231
gastrointestinal tumor3 / 11936925
germ cell tumor26 / 26384598
glioma7 / 10688365
head and neck tumor13 / 13630295
kidney tumor3 / 6895943
leukemia1 / 9584210
liver tumor15 / 96359155
lung tumor7 / 10312767
lymphoma0 / 717550 
non-neoplasia15 / 97250154
normal297 / 336030788
ovarian tumor4 / 7668252
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer7 / 10268068
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder1 / 2975733
blood0 / 1234780 
bone10 / 71655139
bone marrow0 / 488010 
brain113 / 1100989102
cervix2 / 4817141
connective tissue9 / 14925560
ear4 / 16212246
embryonic tissue14 / 21572264
esophagus4 / 20209197
eye10 / 21105447
heart12 / 89626133
intestine13 / 23447255
kidney23 / 211777108
larynx2 / 2414582
liver22 / 207743105
lung24 / 33697471
lymph0 / 442700 
lymph node4 / 9161043
mammary gland7 / 15327145
mouth10 / 67052149
muscle6 / 10771555
nerve1 / 1576863
ovary4 / 10205139
pancreas11 / 21481251
parathyroid6 / 20539292
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta36 / 280825128
prostate12 / 18934563
salivary gland0 / 201550 
skin7 / 21057433
spleen2 / 5395237
stomach4 / 9661941
testis26 / 33044278
thymus1 / 8113112
thyroid4 / 4747384
tonsil0 / 169990 
trachea17 / 52413324
umbilical cord0 / 136800 
uterus18 / 23287877
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203803_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.1
Adipocyte117.7
AdrenalCortex12.7
Adrenalgland8.6
Amygdala10.85
Appendix12.8
AtrioventricularNode12.45
BDCA4+_DentriticCells8.75
Bonemarrow10.25
BronchialEpithelialCells14.65
CD105+_Endothelial8.8
CD14+_Monocytes11.75
CD19+_BCells(neg._sel.)9.4
CD33+_Myeloid10.8
CD34+10.5
CD4+_Tcells9.9
CD56+_NKCells10.35
CD71+_EarlyErythroid8.85
CD8+_Tcells8.55
CardiacMyocytes23.7
Caudatenucleus8.25
Cerebellum7.5
CerebellumPeduncles11.8
CiliaryGanglion11.8
CingulateCortex9.95
Colorectaladenocarcinoma10
DorsalRootGanglion8.9
FetalThyroid10.7
Fetalbrain9.95
Fetalliver8.3
Fetallung7.15
GlobusPallidus9.1
Heart19.75
Hypothalamus9.45
Kidney25.95
Leukemia_chronicMyelogenousK-5627.8
Leukemia_promyelocytic-HL-607.7
Leukemialymphoblastic(MOLT-4)6.25
Liver15.15
Lung10.1
Lymphnode7.2
Lymphoma_burkitts(Daudi)12
Lymphoma_burkitts(Raji)14.4
MedullaOblongata8
OccipitalLobe10.75
OlfactoryBulb7.2
Ovary7.45
Pancreas8.1
PancreaticIslet10.2
ParietalLobe11.55
Pituitary23.95
Placenta9
Pons9.4
PrefrontalCortex11.55
Prostate13.45
Salivarygland8.15
SkeletalMuscle17.85
Skin10.75
SmoothMuscle11.05
Spinalcord9.7
SubthalamicNucleus9.65
SuperiorCervicalGanglion19.45
TemporalLobe9.1
Testis7.65
TestisGermCell6.65
TestisIntersitial7.65
TestisLeydigCell10
TestisSeminiferousTubule7.65
Thalamus9.65
Thymus6.85
Thyroid62.7
Tongue13.15
Tonsil9.35
Trachea11.05
TrigeminalGanglion17.25
Uterus16.2
UterusCorpus10.4
WholeBlood9.1
Wholebrain7.3
colon10.85
pineal_day25.14
pineal_night55.76
retina14.175
small_intestine10.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P180958
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.03 ± 0.23
Basal Forebrain9.07 ± 0.21
Basal Part of Pons9.11 ± 0.23
Cerebellar Cortex8.87 ± 0.18
Cerebellar Nuclei9.29 ± 0.25
Claustrum9.06 ± 0.36
Epithalamus8.98 ± 0.41
Frontal Lobe9.26 ± 0.25
Globus Pallidus9.06 ± 0.44
Hypothalamus9.73 ± 0.25
Insula9.26 ± 0.28
Limbic Lobe8.99 ± 0.36
Mesencephalon9.34 ± 0.34
Myelencephalon9.1 ± 0.34
Occipital Lobe8.88 ± 0.38
Parietal Lobe9.17 ± 0.32
Pontine Tegmentum9.14 ± 0.37
Striatum8.61 ± 0.4
Subthalamus9.72 ± 0.27
Temporal Lobe9.15 ± 0.26
Thalamus9.07 ± 0.22
White Matter8.6 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcyox1CBCerebellum0
0
Pcyox1LSXLateral septal complex0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009620 9 445 453 CPSIILHDR Peptide Atlas
PCYOX_HUMAN_212 11 212 222 FLNEMIAPVMR PRIDE
PCYOX_HUMAN_453 31 453 483 LYYLNGIECAASAMEMSAIAAHNAALLAYHR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved