AutismKB 2.0

Annotation Detail for RHCG


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Basic Information Top
Gene Symbol:RHCG ( C15orf6,PDRC2,RHGK,SLC42A3 )
Gene Full Name: Rh family, C glycoprotein
Band: 15q26.1
Quick LinksEntrez ID:51458; OMIM: 605381; Uniprot ID:RHCG_HUMAN; ENSEMBL ID: ENSG00000140519; HGNC ID: 18140
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult52 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor20 / 172901156
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor27 / 136302198
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal53 / 336030715
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder2 / 2975767
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain5 / 11009894
cervix4 / 4817183
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus38 / 202091880
eye3 / 21105414
heart0 / 896260 
intestine1 / 2344724
kidney23 / 211777108
larynx9 / 24145372
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth22 / 67052328
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx13 / 41328314
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219554_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.75
Adipocyte4.6
AdrenalCortex5.2
Adrenalgland3.95
Amygdala4.85
Appendix4.8
AtrioventricularNode3.9
BDCA4+_DentriticCells4.85
Bonemarrow4.6
BronchialEpithelialCells4.65
CD105+_Endothelial4.7
CD14+_Monocytes4.95
CD19+_BCells(neg._sel.)4.85
CD33+_Myeloid5.95
CD34+5.75
CD4+_Tcells4.95
CD56+_NKCells5.4
CD71+_EarlyErythroid4.4
CD8+_Tcells4.4
CardiacMyocytes6.5
Caudatenucleus4.2
Cerebellum3.8
CerebellumPeduncles5.4
CiliaryGanglion3.5
CingulateCortex4.85
Colorectaladenocarcinoma4.7
DorsalRootGanglion3.8
FetalThyroid4.6
Fetalbrain4.7
Fetalliver4.05
Fetallung3.75
GlobusPallidus3.5
Heart5.9
Hypothalamus5
Kidney4.3
Leukemia_chronicMyelogenousK-5624.25
Leukemia_promyelocytic-HL-604.15
Leukemialymphoblastic(MOLT-4)3.8
Liver6.45
Lung5.15
Lymphnode3.95
Lymphoma_burkitts(Daudi)5.95
Lymphoma_burkitts(Raji)6.55
MedullaOblongata4.3
OccipitalLobe4.25
OlfactoryBulb3.7
Ovary3.2
Pancreas3.8
PancreaticIslet5
ParietalLobe5.05
Pituitary5.5
Placenta4.7
Pons4.5
PrefrontalCortex5.85
Prostate5.5
Salivarygland4.35
SkeletalMuscle5.75
Skin3.8
SmoothMuscle5.3
Spinalcord5
SubthalamicNucleus4.25
SuperiorCervicalGanglion5.75
TemporalLobe4.3
Testis4
TestisGermCell3.9
TestisIntersitial3.95
TestisLeydigCell4.7
TestisSeminiferousTubule4.05
Thalamus4.8
Thymus3.7
Thyroid5.8
Tongue2136.3
Tonsil411.15
Trachea3.95
TrigeminalGanglion5
Uterus3.75
UterusCorpus4.35
WholeBlood5.1
Wholebrain3.95
colon4.7
pineal_day5.74
pineal_night5.68
retina5.65
small_intestine4.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5050_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.23 ± 1.12
Basal Forebrain3.75 ± 0.51
Basal Part of Pons3.44 ± 0.83
Cerebellar Cortex3.27 ± 0.62
Cerebellar Nuclei3.55 ± 0.84
Claustrum4.28 ± 0.91
Epithalamus3.79 ± 0.89
Frontal Lobe3.92 ± 0.64
Globus Pallidus3.98 ± 0.98
Hypothalamus4.29 ± 0.51
Insula3.98 ± 0.68
Limbic Lobe3.66 ± 0.91
Mesencephalon3.8 ± 0.78
Myelencephalon3.84 ± 0.9
Occipital Lobe3.64 ± 0.8
Parietal Lobe3.97 ± 0.83
Pontine Tegmentum3.83 ± 0.95
Striatum3.09 ± 0.9
Subthalamus3.88 ± 1.33
Temporal Lobe3.91 ± 0.71
Thalamus3.74 ± 0.81
White Matter3.04 ± 0.5
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00803381 25 249 273 AAINTYCSLAACVLTSVAISSALHK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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