AutismKB 2.0

Annotation Detail for VCX2


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Basic Information Top
Gene Symbol:VCX2 ( MGC118977,MGC125729,MGC125794,MGC125795,VCX-2r,VCX2R,VCXB )
Gene Full Name: variable charge, X-linked 2
Band: Xp22.31
Quick LinksEntrez ID:51480; OMIM: 300532; Uniprot ID:VCX2_HUMAN; ENSEMBL ID: ENSG00000177504; HGNC ID: 18158
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult0 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal11 / 33603073
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207281_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts43.6
Adipocyte49.8
AdrenalCortex59.55
Adrenalgland47.8
Amygdala48.3
Appendix53.9
AtrioventricularNode49.9
BDCA4+_DentriticCells41.95
Bonemarrow57.35
BronchialEpithelialCells45.5
CD105+_Endothelial53.5
CD14+_Monocytes50.35
CD19+_BCells(neg._sel.)49.9
CD33+_Myeloid57.75
CD34+57.15
CD4+_Tcells47.75
CD56+_NKCells50.5
CD71+_EarlyErythroid51
CD8+_Tcells37.85
CardiacMyocytes55.5
Caudatenucleus59.25
Cerebellum40.95
CerebellumPeduncles59.95
CiliaryGanglion39.25
CingulateCortex58
Colorectaladenocarcinoma34.75
DorsalRootGanglion47.2
FetalThyroid47.25
Fetalbrain46.35
Fetalliver44.25
Fetallung36.95
GlobusPallidus41.75
Heart65.05
Hypothalamus50.95
Kidney43.25
Leukemia_chronicMyelogenousK-56246.8
Leukemia_promyelocytic-HL-6042.75
Leukemialymphoblastic(MOLT-4)43.8
Liver67.75
Lung37.7
Lymphnode41
Lymphoma_burkitts(Daudi)62.95
Lymphoma_burkitts(Raji)64.8
MedullaOblongata44.3
OccipitalLobe55.15
OlfactoryBulb37.7
Ovary34.4
Pancreas46.35
PancreaticIslet52.05
ParietalLobe56.7
Pituitary61.6
Placenta47.1
Pons54.55
PrefrontalCortex56.7
Prostate54
Salivarygland55.75
SkeletalMuscle65.55
Skin42.5
SmoothMuscle53
Spinalcord52.05
SubthalamicNucleus62.9
SuperiorCervicalGanglion64.15
TemporalLobe45.2
Testis174
TestisGermCell88.2
TestisIntersitial106.4
TestisLeydigCell120.4
TestisSeminiferousTubule175.75
Thalamus55.85
Thymus36.2
Thyroid47.25
Tongue51.2
Tonsil47.4
Trachea54.65
TrigeminalGanglion54.85
Uterus30.85
UterusCorpus46.75
WholeBlood50.1
Wholebrain37.7
colon47.4
pineal_day46.48
pineal_night41.36
retina44.85
small_intestine45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P33083
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5 ± 0.55
Basal Forebrain5.13 ± 0.24
Basal Part of Pons5.35 ± 0.44
Cerebellar Cortex4.61 ± 0.4
Cerebellar Nuclei4.92 ± 0.86
Claustrum4.5 ± 0.95
Epithalamus5.33 ± 0.71
Frontal Lobe4.92 ± 0.53
Globus Pallidus5.7 ± 0.35
Hypothalamus4.64 ± 0.55
Insula5.25 ± 0.33
Limbic Lobe5.19 ± 0.68
Mesencephalon5.07 ± 0.64
Myelencephalon5.15 ± 0.65
Occipital Lobe5.79 ± 0.65
Parietal Lobe5.35 ± 0.55
Pontine Tegmentum5.18 ± 0.7
Striatum5.61 ± 0.45
Subthalamus5.27 ± 0.35
Temporal Lobe5.34 ± 0.5
Thalamus5.42 ± 0.54
White Matter4.97 ± 0.25
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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