AutismKB 2.0

Annotation Detail for GTSE1


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Basic Information Top
Gene Symbol:GTSE1 ( B99 )
Gene Full Name: G-2 and S-phase expressed 1
Band: 22q13.31
Quick LinksEntrez ID:51512; OMIM: 607477; Uniprot ID:GTSE1_HUMAN; ENSEMBL ID: ENSG00000075218; HGNC ID: 13698
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst5 / 6231980
fetus29 / 56401251
neonate1 / 3109732
infant1 / 2362042
juvenile9 / 55556161
adult49 / 193912125
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus9 / 56401215
neonate0 / 310970 
infant2 / 2362084
juvenile2 / 5555635
adult64 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor7 / 17290404
gastrointestinal tumor2 / 11936916
germ cell tumor35 / 263845132
glioma7 / 10688365
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia8 / 9584283
liver tumor5 / 9635951
lung tumor3 / 10312729
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal92 / 336030727
ovarian tumor5 / 7668265
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS28 / 125680222
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor8 / 12494964
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor2 / 17290115
gastrointestinal tumor19 / 119369159
germ cell tumor7 / 26384526
glioma5 / 10688346
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal104 / 336030730
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood11 / 12347889
bone0 / 716550 
bone marrow1 / 4880120
brain30 / 110098927
cervix2 / 4817141
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus7 / 20209346
eye1 / 2110544
heart0 / 896260 
intestine5 / 23447221
kidney9 / 21177742
larynx0 / 241450 
liver11 / 20774352
lung12 / 33697435
lymph1 / 4427022
lymph node14 / 91610152
mammary gland5 / 15327132
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary7 / 10205168
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate2 / 18934510
salivary gland0 / 201550 
skin12 / 21057456
spleen0 / 539520 
stomach0 / 966190 
testis31 / 33044293
thymus15 / 81131184
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular2 / 5178038
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites13 / 40015324
bladder0 / 297570 
blood4 / 12347832
bone2 / 7165527
bone marrow0 / 488010 
brain46 / 110098941
cervix10 / 48171207
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus2 / 2020998
eye3 / 21105414
heart4 / 8962644
intestine10 / 23447242
kidney4 / 21177718
larynx0 / 241450 
liver3 / 20774314
lung5 / 33697414
lymph1 / 4427022
lymph node3 / 9161032
mammary gland4 / 15327126
mouth0 / 670520 
muscle0 / 1077150 
nerve2 / 15768126
ovary4 / 10205139
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate2 / 18934510
salivary gland2 / 2015599
skin6 / 21057428
spleen1 / 5395218
stomach7 / 9661972
testis3 / 3304429
thymus11 / 81131135
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215942_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts115
Adipocyte9.9
AdrenalCortex12.4
Adrenalgland9.35
Amygdala10
Appendix11.95
AtrioventricularNode12.45
BDCA4+_DentriticCells10.65
Bonemarrow18.7
BronchialEpithelialCells11
CD105+_Endothelial10.7
CD14+_Monocytes10.75
CD19+_BCells(neg._sel.)9.55
CD33+_Myeloid12.15
CD34+12.55
CD4+_Tcells9.3
CD56+_NKCells11.3
CD71+_EarlyErythroid45.65
CD8+_Tcells8.4
CardiacMyocytes39.05
Caudatenucleus11.7
Cerebellum8.65
CerebellumPeduncles13.2
CiliaryGanglion10.65
CingulateCortex10.2
Colorectaladenocarcinoma21.1
DorsalRootGanglion10.15
FetalThyroid10.25
Fetalbrain9.6
Fetalliver10.4
Fetallung7.7
GlobusPallidus12.15
Heart22.1
Hypothalamus10.2
Kidney10.2
Leukemia_chronicMyelogenousK-56210.15
Leukemia_promyelocytic-HL-6018.5
Leukemialymphoblastic(MOLT-4)81.05
Liver18.1
Lung11
Lymphnode10.45
Lymphoma_burkitts(Daudi)35.25
Lymphoma_burkitts(Raji)15.95
MedullaOblongata9.35
OccipitalLobe8.35
OlfactoryBulb7.85
Ovary7.75
Pancreas9
PancreaticIslet11.3
ParietalLobe11.65
Pituitary13.15
Placenta8.8
Pons10.2
PrefrontalCortex11.95
Prostate11.75
Salivarygland8.8
SkeletalMuscle22.25
Skin11.15
SmoothMuscle11.55
Spinalcord10.6
SubthalamicNucleus10.8
SuperiorCervicalGanglion15.3
TemporalLobe9.5
Testis10
TestisGermCell9
TestisIntersitial9.15
TestisLeydigCell11.6
TestisSeminiferousTubule8.75
Thalamus10.6
Thymus39.75
Thyroid11.6
Tongue11.6
Tonsil13.9
Trachea8.45
TrigeminalGanglion14.65
Uterus7.65
UterusCorpus12.1
WholeBlood10.35
Wholebrain7.55
colon10.25
pineal_day13.04
pineal_night11.94
retina12.3
small_intestine9.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P57588
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.11 ± 1.04
Basal Forebrain1.72 ± 0.32
Basal Part of Pons1.74 ± 0.48
Cerebellar Cortex1.79 ± 0.77
Cerebellar Nuclei2.02 ± 0.75
Claustrum2.39 ± 0.77
Epithalamus1.48 ± 0.62
Frontal Lobe1.58 ± 0.71
Globus Pallidus1.87 ± 0.39
Hypothalamus1.71 ± 0.71
Insula1.44 ± 0.51
Limbic Lobe1.66 ± 0.66
Mesencephalon1.8 ± 0.72
Myelencephalon1.7 ± 0.64
Occipital Lobe1.65 ± 0.65
Parietal Lobe1.64 ± 0.79
Pontine Tegmentum1.65 ± 0.74
Striatum1.77 ± 0.65
Subthalamus1.76 ± 0.68
Temporal Lobe1.58 ± 0.7
Thalamus1.71 ± 0.58
White Matter2.41 ± 0.58
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Gtse1CBCerebellum5.13
5.2
Gtse1CTXCerebral cortex3.5
3.85
Gtse1HIPHippocampal region1.97
2.23
Gtse1HPFHippocampal formation1.78
2
Gtse1HYHypothalamus4.03
2.98
Gtse1LSXLateral septal complex2.76
2.69
Gtse1MBMidbrain3.32
3.28
Gtse1MYMedulla7.01
8.39
Gtse1OLFOlfactory bulb4.22
4.44
Gtse1PPons4.33
4.85
Gtse1PALPallidum1.17
1.11
Gtse1RHPRetrohippocampal region1.13
1.49
Gtse1sAMYStriatum-like amygdalar nuclei0.22
0.16
Gtse1STRStriatum1.64
1.51
Gtse1STRdStriatum dorsal region1.39
1.47
Gtse1STRvStriatum ventral region2.15
1.48
Gtse1THThalamus3.21
2.72
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010008 15 215 229 ESCTAHAASQAATQR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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