Annotation Detail for CXXC5
Basic Information Top
| Gene Symbol: | CXXC5 ( CF5,RINF,WID ) |
|---|---|
| Gene Full Name: | CXXC finger protein 5 |
| Band: | 5q31.2 |
| Quick Links | Entrez ID:51523; OMIM: 612752; Uniprot ID:CXXC5_HUMAN; ENSEMBL ID: ENSG00000171604; HGNC ID: 26943 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.189119
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 44 / 564012 | 78 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 153 / 1939121 | 78 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 27 / 106883 | 252 |  |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 252 / 3360307 | 74 | |
| ovarian tumor | 20 / 76682 | 260 | |
| pancreatic tumor | 22 / 104616 | 210 | |
| primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 11 / 90257 | 121 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 9 / 123478 | 72 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 110 / 1100989 | 99 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 30 / 211054 | 142 | |
| heart | 7 / 89626 | 78 | |
| intestine | 19 / 234472 | 81 | |
| kidney | 21 / 211777 | 99 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 23 / 336974 | 68 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 20 / 102051 | 195 | |
| pancreas | 27 / 214812 | 125 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 4 / 16585 | 241 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 16 / 210574 | 75 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 6 / 96619 | 62 | |
| testis | 19 / 330442 | 57 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 19 / 232878 | 81 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P930062
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.25 ± 0.42 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.18 ± 0.34 | |
| Basal Part of Pons | 9.09 ± 0.33 | |
| Cerebellar Cortex | 9.05 ± 0.2 | |
| Cerebellar Nuclei | 8.7 ± 0.34 | |
| Claustrum | 8.58 ± 0.46 | |
| Epithalamus | 9.27 ± 0.4 | |
| Frontal Lobe | 8.73 ± 0.34 | |
| Globus Pallidus | 8.25 ± 0.18 | |
| Hypothalamus | 8.62 ± 0.63 | |
| Insula | 8.8 ± 0.13 | |
| Limbic Lobe | 8.4 ± 0.41 | |
| Mesencephalon | 8.4 ± 0.45 | |
| Myelencephalon | 8.62 ± 0.45 | |
| Occipital Lobe | 8.29 ± 0.42 | |
| Parietal Lobe | 8.58 ± 0.37 | |
| Pontine Tegmentum | 8.55 ± 0.44 | |
| Striatum | 7.5 ± 0.42 | |
| Subthalamus | 8.15 ± 0.26 | |
| Temporal Lobe | 8.77 ± 0.27 | |
| Thalamus | 8.74 ± 0.33 | |
| White Matter | 9.13 ± 0.1 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cxxc5 | CB | Cerebellum | 74.34 | |
| 100 | | |||
| Cxxc5 | CTX | Cerebral cortex | 100 | |
| 95.35 | | |||
| Cxxc5 | HIP | Hippocampal region | 40.84 | |
| 64.69 | | |||
| Cxxc5 | HPF | Hippocampal formation | 42.62 | |
| 52.13 | | |||
| Cxxc5 | HY | Hypothalamus | 19.08 | |
| 14.7 | | |||
| Cxxc5 | LSX | Lateral septal complex | 13.14 | |
| 10.1 | | |||
| Cxxc5 | MB | Midbrain | 24.26 | |
| 20.82 | | |||
| Cxxc5 | MY | Medulla | 43.65 | |
| 47.42 | | |||
| Cxxc5 | OLF | Olfactory bulb | 69.64 | |
| 69.28 | | |||
| Cxxc5 | P | Pons | 40.87 | |
| 43.69 | | |||
| Cxxc5 | PAL | Pallidum | 19.26 | |
| 17.1 | | |||
| Cxxc5 | RHP | Retrohippocampal region | 47.29 | |
| 37.65 | | |||
| Cxxc5 | sAMY | Striatum-like amygdalar nuclei | 16.42 | |
| 13.52 | | |||
| Cxxc5 | STR | Striatum | 14.46 | |
| 11.91 | | |||
| Cxxc5 | STRd | Striatum dorsal region | 13.87 | |
| 12.12 | | |||
| Cxxc5 | STRv | Striatum ventral region | 15.58 | |
| 11 | | |||
| Cxxc5 | TH | Thalamus | 47.29 | |
| 42.54 | |