Annotation Detail for ZC3HC1
Basic Information Top
| Gene Symbol: | ZC3HC1 ( 1110054L24Rik,FBXO50,NIPA ) |
|---|---|
| Gene Full Name: | zinc finger, C3HC-type containing 1 |
| Band: | 7q32.2 |
| Quick Links | Entrez ID:51530; OMIM: NA; Uniprot ID:NIPA_HUMAN; ENSEMBL ID: ENSG00000091732; HGNC ID: 29913 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.194157
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 17 / 564012 | 30 | |
| neonate | 3 / 31097 | 96 |  |
| infant | 2 / 23620 | 84 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 68 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 25 / 263845 | 94 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 102 / 3360307 | 30 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 9 / 125680 | 71 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 1 / 29757 | 33 | |
| blood | 5 / 123478 | 40 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 10 / 211054 | 47 | |
| heart | 4 / 89626 | 44 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 15 / 336974 | 44 | |
| lymph | 5 / 44270 | 112 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 11 / 210574 | 52 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 31 / 330442 | 93 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_7422_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.99 ± 0.74 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.77 ± 0.46 | |
| Basal Part of Pons | 2.87 ± 0.68 | |
| Cerebellar Cortex | 3.06 ± 0.58 | |
| Cerebellar Nuclei | 2.76 ± 0.44 | |
| Claustrum | 2.77 ± 0.53 | |
| Epithalamus | 2.62 ± 0.67 | |
| Frontal Lobe | 2.91 ± 0.62 | |
| Globus Pallidus | 2.53 ± 0.84 | |
| Hypothalamus | 3.07 ± 0.6 | |
| Insula | 2.91 ± 0.52 | |
| Limbic Lobe | 2.7 ± 0.63 | |
| Mesencephalon | 2.81 ± 0.66 | |
| Myelencephalon | 2.84 ± 0.6 | |
| Occipital Lobe | 2.59 ± 0.72 | |
| Parietal Lobe | 2.77 ± 0.56 | |
| Pontine Tegmentum | 2.81 ± 0.76 | |
| Striatum | 2.55 ± 0.76 | |
| Subthalamus | 2.71 ± 0.6 | |
| Temporal Lobe | 2.86 ± 0.61 | |
| Thalamus | 2.82 ± 0.59 | |
| White Matter | 2.36 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Zc3hc1 | CB | Cerebellum | 7.02 | |
| 6.63 | | |||
| Zc3hc1 | CTX | Cerebral cortex | 17.34 | |
| 12.01 | | |||
| Zc3hc1 | HIP | Hippocampal region | 15.11 | |
| 15.69 | | |||
| Zc3hc1 | HPF | Hippocampal formation | 15.81 | |
| 14.44 | | |||
| Zc3hc1 | HY | Hypothalamus | 7.46 | |
| 6.41 | | |||
| Zc3hc1 | LSX | Lateral septal complex | 3.13 | |
| 2.43 | | |||
| Zc3hc1 | MB | Midbrain | 6.22 | |
| 6.34 | | |||
| Zc3hc1 | MY | Medulla | 14.9 | |
| 17.35 | | |||
| Zc3hc1 | OLF | Olfactory bulb | 20.23 | |
| 14.43 | | |||
| Zc3hc1 | P | Pons | 13.91 | |
| 17.49 | | |||
| Zc3hc1 | PAL | Pallidum | 7.1 | |
| 5.97 | | |||
| Zc3hc1 | RHP | Retrohippocampal region | 18.15 | |
| 13.14 | | |||
| Zc3hc1 | sAMY | Striatum-like amygdalar nuclei | 5.93 | |
| 3.88 | | |||
| Zc3hc1 | STR | Striatum | 5.61 | |
| 3.94 | | |||
| Zc3hc1 | STRd | Striatum dorsal region | 3.78 | |
| 2.6 | | |||
| Zc3hc1 | STRv | Striatum ventral region | 10.01 | |
| 6.63 | | |||
| Zc3hc1 | TH | Thalamus | 8.55 | |
| 6.48 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00065501 | 25 | 51 | 75 | DTSATSQSVNGSPQAEQPSLESTSK | Peptide Atlas |