Annotation Detail for VTA1
Basic Information Top
| Gene Symbol: | VTA1 ( C6orf55,DRG-1,DRG1,FLJ27228,LIP5,My012,SBP1 ) |
|---|---|
| Gene Full Name: | Vps20-associated 1 homolog (S. cerevisiae) |
| Band: | 6q24.1-q24.2 |
| Quick Links | Entrez ID:51534; OMIM: 610902; Uniprot ID:VTA1_HUMAN; ENSEMBL ID: ENSG00000009844; HGNC ID: 20954 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.431367
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 69 / 564012 | 122 | |
| neonate | 4 / 31097 | 128 | |
| infant | 7 / 23620 | 296 |  |
| juvenile | 5 / 55556 | 89 | |
| adult | 162 / 1939121 | 83 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 8 / 17475 | 457 | |
| breast (mammary gland) tumor | 18 / 94178 | 191 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 5 / 114246 | 43 |  |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 30 / 263845 | 113 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 14 / 95842 | 146 | |
| liver tumor | 19 / 96359 | 197 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 356 / 3360307 | 105 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 12 / 125680 | 95 | |
| prostate cancer | 8 / 102680 | 77 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 14 / 124949 | 112 | |
| soft tissue/muscle tissue tumor | 13 / 125191 | 103 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 7 / 33197 | 210 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 7 / 29757 | 235 | |
| blood | 16 / 123478 | 129 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 16 / 48801 | 327 | |
| brain | 127 / 1100989 | 115 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 20 / 149255 | 133 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 9 / 211054 | 42 | |
| heart | 12 / 89626 | 133 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 27 / 211777 | 127 | |
| larynx | 1 / 24145 | 41 | |
| liver | 23 / 207743 | 110 | |
| lung | 23 / 336974 | 68 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 28 / 153271 | 182 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 22 / 214812 | 102 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 13 / 41328 | 314 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 18 / 280825 | 64 | |
| prostate | 19 / 189345 | 100 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 29 / 210574 | 137 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 7 / 96619 | 72 | |
| testis | 27 / 330442 | 81 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 17 / 232878 | 72 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: A_23_P42368
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.83 ± 0.32 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.53 ± 0.29 | |
| Basal Part of Pons | 5.8 ± 0.42 | |
| Cerebellar Cortex | 5.77 ± 0.24 | |
| Cerebellar Nuclei | 5.91 ± 0.34 | |
| Claustrum | 5.93 ± 0.41 | |
| Epithalamus | 5.61 ± 0.44 | |
| Frontal Lobe | 5.91 ± 0.29 | |
| Globus Pallidus | 5.27 ± 0.27 | |
| Hypothalamus | 5.83 ± 0.42 | |
| Insula | 5.84 ± 0.27 | |
| Limbic Lobe | 5.91 ± 0.41 | |
| Mesencephalon | 5.7 ± 0.37 | |
| Myelencephalon | 5.82 ± 0.36 | |
| Occipital Lobe | 5.6 ± 0.43 | |
| Parietal Lobe | 5.89 ± 0.36 | |
| Pontine Tegmentum | 5.85 ± 0.34 | |
| Striatum | 5.5 ± 0.37 | |
| Subthalamus | 6.4 ± 0.14 | |
| Temporal Lobe | 5.89 ± 0.33 | |
| Thalamus | 5.78 ± 0.31 | |
| White Matter | 5.81 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1110059P08Rik | CB | Cerebellum | 38.18 | |
| 59.07 | | |||
| 1110059P08Rik | CTX | Cerebral cortex | 96.48 | |
| 82.91 | | |||
| 1110059P08Rik | HIP | Hippocampal region | 61.3 | |
| 85.88 | | |||
| 1110059P08Rik | HPF | Hippocampal formation | 79.76 | |
| 92.1 | | |||
| 1110059P08Rik | HY | Hypothalamus | 81.79 | |
| 72.19 | | |||
| 1110059P08Rik | LSX | Lateral septal complex | 58.13 | |
| 47.07 | | |||
| 1110059P08Rik | MB | Midbrain | 56.38 | |
| 54.06 | | |||
| 1110059P08Rik | MY | Medulla | 78.72 | |
| 93.5 | | |||
| 1110059P08Rik | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| 1110059P08Rik | P | Pons | 68.79 | |
| 78.91 | | |||
| 1110059P08Rik | PAL | Pallidum | 68.29 | |
| 67.21 | | |||
| 1110059P08Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 1110059P08Rik | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 88.51 | | |||
| 1110059P08Rik | STR | Striatum | 76.54 | |
| 62.85 | | |||
| 1110059P08Rik | STRd | Striatum dorsal region | 65.78 | |
| 53.09 | | |||
| 1110059P08Rik | STRv | Striatum ventral region | 100 | |
| 94.91 | | |||
| 1110059P08Rik | TH | Thalamus | 71.09 | |
| 67.23 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000744 | 9 | 149 | 157 | ATYIHNCLK | Peptide Atlas |
| VTA1_HUMAN_2 | 21 | 2 | 22 | AALAPLPPLPAQFKSIQHHLR | PRIDE |
| VTA1_HUMAN_251 | 13 | 251 | 263 | PALFNTISQGDVR | PRIDE |
| VTA1_HUMAN_278 | 20 | 278 | 297 | YAGSALQYEDVSTAVQNLQK | PRIDE |