Annotation Detail for UFM1
Basic Information Top
| Gene Symbol: | UFM1 ( BM-002,C13orf20,bA131P10.1 ) |
|---|---|
| Gene Full Name: | ubiquitin-fold modifier 1 |
| Band: | 13q13.3 |
| Quick Links | Entrez ID:51569; OMIM: 610553; Uniprot ID:UFM1_HUMAN; ENSEMBL ID: ENSG00000120686; HGNC ID: 20597 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.727566
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 40 / 1939121 | 20 | |
| embryoid body | 3 / 70761 | 42 | |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 23 / 564012 | 40 | |
| neonate | 4 / 31097 | 128 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 72 / 1939121 | 37 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 106 / 3360307 | 31 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 5 / 90257 | 55 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 8 / 68959 | 116 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 193 / 3360307 | 57 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 30 / 1100989 | 27 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 4 / 336974 | 11 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 16 / 280825 | 56 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 9 / 210574 | 42 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 2 / 51780 | 38 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 6 / 123478 | 48 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 93 / 1100989 | 84 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 0 / 24145 | 0 | |
| liver | 22 / 207743 | 105 | |
| lung | 7 / 336974 | 20 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 8 / 210574 | 37 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 14 / 330442 | 42 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 12 / 51780 | 231 |  |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218050_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 116.35 | |
| Adipocyte | 98.9 | |
| AdrenalCortex | 89.7 | |
| Adrenalgland | 81.55 | |
| Amygdala | 367.45 | |
| Appendix | 86.2 | |
| AtrioventricularNode | 91.3 | |
| BDCA4+_DentriticCells | 234.95 | |
| Bonemarrow | 92.05 | |
| BronchialEpithelialCells | 111.1 | |
| CD105+_Endothelial | 95.35 | |
| CD14+_Monocytes | 129.4 | |
| CD19+_BCells(neg._sel.) | 218.75 | |
| CD33+_Myeloid | 180.85 | |
| CD34+ | 224.05 | |
| CD4+_Tcells | 170.35 | |
| CD56+_NKCells | 258.45 | |
| CD71+_EarlyErythroid | 41.65 | |
| CD8+_Tcells | 143.35 | |
| CardiacMyocytes | 146.65 | |
| Caudatenucleus | 88.95 | |
| Cerebellum | 70.1 | |
| CerebellumPeduncles | 87.55 | |
| CiliaryGanglion | 97.75 | |
| CingulateCortex | 97.55 | |
| Colorectaladenocarcinoma | 262 | |
| DorsalRootGanglion | 66.95 | |
| FetalThyroid | 101.65 | |
| Fetalbrain | 170.65 | |
| Fetalliver | 89.7 | |
| Fetallung | 100.1 | |
| GlobusPallidus | 90.75 | |
| Heart | 138.05 | |
| Hypothalamus | 154.15 | |
| Kidney | 60.6 | |
| Leukemia_chronicMyelogenousK-562 | 96 | |
| Leukemia_promyelocytic-HL-60 | 70.85 | |
| Leukemialymphoblastic(MOLT-4) | 62.55 | |
| Liver | 126.15 | |
| Lung | 112.25 | |
| Lymphnode | 122.55 | |
| Lymphoma_burkitts(Daudi) | 118.25 | |
| Lymphoma_burkitts(Raji) | 174.25 | |
| MedullaOblongata | 76.95 | |
| OccipitalLobe | 94.7 | |
| OlfactoryBulb | 68.05 | |
| Ovary | 92.9 | |
| Pancreas | 95.1 | |
| PancreaticIslet | 164.9 | |
| ParietalLobe | 94.9 | |
| Pituitary | 115.45 | |
| Placenta | 116.45 | |
| Pons | 102.65 | |
| PrefrontalCortex | 157 | |
| Prostate | 132.1 | |
| Salivarygland | 85.1 | |
| SkeletalMuscle | 97.15 | |
| Skin | 81.5 | |
| SmoothMuscle | 144.2 | |
| Spinalcord | 132.4 | |
| SubthalamicNucleus | 63.6 | |
| SuperiorCervicalGanglion | 126.15 | |
| TemporalLobe | 86.45 | |
| Testis | 51.3 | |
| TestisGermCell | 63.2 | |
| TestisIntersitial | 53.5 | |
| TestisLeydigCell | 73.05 | |
| TestisSeminiferousTubule | 64.85 | |
| Thalamus | 94.95 | |
| Thymus | 69.5 | |
| Thyroid | 266.2 | |
| Tongue | 79.9 | |
| Tonsil | 94.05 | |
| Trachea | 101.05 | |
| TrigeminalGanglion | 95.05 | |
| Uterus | 179 | |
| UterusCorpus | 85.2 | |
| WholeBlood | 127.75 | |
| Wholebrain | 85.85 | |
| colon | 174.1 | |
| pineal_day | 131.3 | |
| pineal_night | 123.42 | |
| retina | 138.55 | |
| small_intestine | 173.95 | |
- Probe name: A_23_P99465
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.63 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.69 ± 0.17 | |
| Basal Part of Pons | 7.36 ± 0.23 | |
| Cerebellar Cortex | 7.37 ± 0.23 | |
| Cerebellar Nuclei | 7.37 ± 0.29 | |
| Claustrum | 7.21 ± 0.49 | |
| Epithalamus | 7.56 ± 0.15 | |
| Frontal Lobe | 7.57 ± 0.26 | |
| Globus Pallidus | 7.88 ± 0.23 | |
| Hypothalamus | 7.76 ± 0.25 | |
| Insula | 7.72 ± 0.16 | |
| Limbic Lobe | 7.6 ± 0.41 | |
| Mesencephalon | 7.51 ± 0.27 | |
| Myelencephalon | 7.5 ± 0.33 | |
| Occipital Lobe | 7.33 ± 0.38 | |
| Parietal Lobe | 7.45 ± 0.29 | |
| Pontine Tegmentum | 7.65 ± 0.32 | |
| Striatum | 7.37 ± 0.26 | |
| Subthalamus | 7.48 ± 0.18 | |
| Temporal Lobe | 7.67 ± 0.22 | |
| Thalamus | 7.35 ± 0.23 | |
| White Matter | 8.23 ± 0.13 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ufm1 | CB | Cerebellum | 21.2 | |
| 33.34 | | |||
| Ufm1 | CTX | Cerebral cortex | 35.69 | |
| 29.8 | | |||
| Ufm1 | HIP | Hippocampal region | 31.11 | |
| 42.82 | | |||
| Ufm1 | HPF | Hippocampal formation | 32.58 | |
| 36.88 | | |||
| Ufm1 | HY | Hypothalamus | 8.3 | |
| 7.12 | | |||
| Ufm1 | LSX | Lateral septal complex | 31 | |
| 24.25 | | |||
| Ufm1 | MB | Midbrain | 15.79 | |
| 16.05 | | |||
| Ufm1 | MY | Medulla | 23.71 | |
| 30.19 | | |||
| Ufm1 | OLF | Olfactory bulb | 23.72 | |
| 18.33 | | |||
| Ufm1 | P | Pons | 21.8 | |
| 25.44 | | |||
| Ufm1 | PAL | Pallidum | 13.88 | |
| 14.16 | | |||
| Ufm1 | RHP | Retrohippocampal region | 35.87 | |
| 31.27 | | |||
| Ufm1 | sAMY | Striatum-like amygdalar nuclei | 7.54 | |
| 6.36 | | |||
| Ufm1 | STR | Striatum | 9.91 | |
| 8.3 | | |||
| Ufm1 | STRd | Striatum dorsal region | 8.54 | |
| 7.52 | | |||
| Ufm1 | STRv | Striatum ventral region | 8.72 | |
| 6.79 | | |||
| Ufm1 | TH | Thalamus | 20.6 | |
| 18.51 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00136031 | 15 | 20 | 34 | VLSVPESTPFTAVLK | Peptide Atlas |