AutismKB 2.0

Annotation Detail for GDE1


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Basic Information Top
Gene Symbol:GDE1 ( 363E6.2,MIR16 )
Gene Full Name: glycerophosphodiester phosphodiesterase 1
Band: 16p12.3
Quick LinksEntrez ID:51573; OMIM: 605943; Uniprot ID:GDE1_HUMAN; ENSEMBL ID: ENSG00000006007; HGNC ID: 29644
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body10 / 70761141
blastocyst2 / 6231932
fetus30 / 56401253
neonate1 / 3109732
infant2 / 2362084
juvenile6 / 55556107
adult213 / 1939121109
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor5 / 34366145
chondrosarcoma6 / 8282372
colorectal tumor22 / 114246192
esophageal tumor2 / 17290115
gastrointestinal tumor8 / 11936967
germ cell tumor24 / 26384590
glioma14 / 106883130
head and neck tumor8 / 13630258
kidney tumor15 / 68959217
leukemia5 / 9584252
liver tumor9 / 9635993
lung tumor8 / 10312777
lymphoma7 / 7175597
non-neoplasia15 / 97250154
normal247 / 336030773
ovarian tumor11 / 76682143
pancreatic tumor27 / 104616258
primitive neuroectodermal tumor of the CNS26 / 125680206
prostate cancer29 / 102680282
retinoblastoma3 / 4635664
skin tumor11 / 12494988
soft tissue/muscle tissue tumor10 / 12519179
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites1 / 4001524
bladder0 / 297570 
blood5 / 12347840
bone1 / 7165513
bone marrow1 / 4880120
brain125 / 1100989113
cervix5 / 48171103
connective tissue8 / 14925553
ear2 / 16212123
embryonic tissue16 / 21572274
esophagus2 / 2020998
eye30 / 211054142
heart3 / 8962633
intestine40 / 234472170
kidney32 / 211777151
larynx1 / 2414541
liver15 / 20774372
lung32 / 33697494
lymph6 / 44270135
lymph node1 / 9161010
mammary gland10 / 15327165
mouth0 / 670520 
muscle11 / 107715102
nerve3 / 15768190
ovary15 / 102051146
pancreas35 / 214812162
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta50 / 280825178
prostate37 / 189345195
salivary gland2 / 2015599
skin16 / 21057475
spleen1 / 5395218
stomach11 / 96619113
testis21 / 33044263
thymus2 / 8113124
thyroid6 / 47473126
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord3 / 13680219
uterus20 / 23287885
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202593_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts55.9
Adipocyte240.1
AdrenalCortex18.35
Adrenalgland53.2
Amygdala476.55
Appendix30.9
AtrioventricularNode14.45
BDCA4+_DentriticCells74.8
Bonemarrow90.55
BronchialEpithelialCells150.8
CD105+_Endothelial31.7
CD14+_Monocytes107.55
CD19+_BCells(neg._sel.)31
CD33+_Myeloid106.6
CD34+68.05
CD4+_Tcells13.6
CD56+_NKCells56.4
CD71+_EarlyErythroid273
CD8+_Tcells20.55
CardiacMyocytes66.05
Caudatenucleus133.2
Cerebellum72.3
CerebellumPeduncles86.45
CiliaryGanglion28
CingulateCortex83
Colorectaladenocarcinoma78.5
DorsalRootGanglion23.45
FetalThyroid39.1
Fetalbrain52.9
Fetalliver69.8
Fetallung69.35
GlobusPallidus45.45
Heart72.95
Hypothalamus126.05
Kidney67.35
Leukemia_chronicMyelogenousK-56225.95
Leukemia_promyelocytic-HL-6037.1
Leukemialymphoblastic(MOLT-4)37.7
Liver41.95
Lung329.15
Lymphnode14.4
Lymphoma_burkitts(Daudi)64.2
Lymphoma_burkitts(Raji)53.95
MedullaOblongata105.3
OccipitalLobe165.7
OlfactoryBulb39.2
Ovary11.3
Pancreas23.6
PancreaticIslet88.75
ParietalLobe96.9
Pituitary71.55
Placenta85.9
Pons49
PrefrontalCortex120.15
Prostate201.7
Salivarygland30.85
SkeletalMuscle33.85
Skin8.95
SmoothMuscle145.5
Spinalcord66.35
SubthalamicNucleus53
SuperiorCervicalGanglion22.05
TemporalLobe104.95
Testis61.8
TestisGermCell41.05
TestisIntersitial71.85
TestisLeydigCell38.65
TestisSeminiferousTubule33.2
Thalamus207.1
Thymus40.25
Thyroid190.3
Tongue21.1
Tonsil39.8
Trachea92.3
TrigeminalGanglion21.4
Uterus49.95
UterusCorpus34.65
WholeBlood82.1
Wholebrain340.25
colon498.95
pineal_day50.16
pineal_night63.94
retina75.875
small_intestine202.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P54758
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.42 ± 0.36
Basal Forebrain7.46 ± 0.17
Basal Part of Pons7.66 ± 0.58
Cerebellar Cortex7.35 ± 0.21
Cerebellar Nuclei7.63 ± 0.36
Claustrum7.24 ± 0.5
Epithalamus7.03 ± 0.61
Frontal Lobe7.81 ± 0.31
Globus Pallidus8.26 ± 0.2
Hypothalamus7.16 ± 0.36
Insula7.69 ± 0.33
Limbic Lobe7.56 ± 0.46
Mesencephalon7.64 ± 0.3
Myelencephalon7.64 ± 0.4
Occipital Lobe7.15 ± 0.41
Parietal Lobe7.56 ± 0.31
Pontine Tegmentum7.63 ± 0.36
Striatum7.53 ± 0.34
Subthalamus7.88 ± 0.15
Temporal Lobe7.75 ± 0.32
Thalamus7.73 ± 0.23
White Matter8.96 ± 0.17
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Mir16CBCerebellum60.26
100
Mir16CTXCerebral cortex100
100
Mir16HIPHippocampal region100
100
Mir16HPFHippocampal formation100
100
Mir16HYHypothalamus100
100
Mir16LSXLateral septal complex100
100
Mir16MBMidbrain100
100
Mir16MYMedulla100
100
Mir16OLFOlfactory bulb100
100
Mir16PPons100
100
Mir16PALPallidum100
100
Mir16RHPRetrohippocampal region100
100
Mir16sAMYStriatum-like amygdalar nuclei100
100
Mir16STRStriatum100
100
Mir16STRdStriatum dorsal region100
100
Mir16STRvStriatum ventral region100
100
Mir16THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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