AutismKB 2.0

Annotation Detail for LSR


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Basic Information Top
Gene Symbol:LSR ( ILDR3,LISCH7,MGC10659,MGC48312,MGC48503 )
Gene Full Name: lipolysis stimulated lipoprotein receptor
Band: 19q13.12
Quick LinksEntrez ID:51599; OMIM: NA; Uniprot ID:LSR_HUMAN; ENSEMBL ID: ENSG00000105699; HGNC ID: 29572
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst10 / 62319160
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile5 / 5555689
adult183 / 193912194
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma1 / 1747557
breast (mammary gland) tumor21 / 94178222
cervical tumor6 / 34366174
chondrosarcoma2 / 8282324
colorectal tumor31 / 114246271
esophageal tumor1 / 1729057
gastrointestinal tumor70 / 119369586
germ cell tumor15 / 26384556
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia3 / 9584231
liver tumor5 / 9635951
lung tumor5 / 10312748
lymphoma7 / 7175597
non-neoplasia5 / 9725051
normal217 / 336030764
ovarian tumor14 / 76682182
pancreatic tumor15 / 104616143
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer14 / 102680136
retinoblastoma4 / 4635686
skin tumor4 / 12494932
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor18 / 90257199
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland5 / 33197150
ascites34 / 40015849
bladder8 / 29757268
blood2 / 12347816
bone0 / 716550 
bone marrow1 / 4880120
brain24 / 110098921
cervix14 / 48171290
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue25 / 215722115
esophagus1 / 2020949
eye7 / 21105433
heart2 / 8962622
intestine67 / 234472285
kidney22 / 211777103
larynx0 / 241450 
liver9 / 20774343
lung20 / 33697459
lymph3 / 4427067
lymph node6 / 9161065
mammary gland25 / 153271163
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary21 / 102051205
pancreas21 / 21481297
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta39 / 280825138
prostate26 / 189345137
salivary gland0 / 201550 
skin4 / 21057418
spleen3 / 5395255
stomach37 / 96619382
testis25 / 33044275
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus24 / 232878103
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208190_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts126.8
Adipocyte14.2
AdrenalCortex39.35
Adrenalgland23.3
Amygdala16.05
Appendix15.25
AtrioventricularNode12.65
BDCA4+_DentriticCells15.25
Bonemarrow15.85
BronchialEpithelialCells87.6
CD105+_Endothelial13.7
CD14+_Monocytes15.6
CD19+_BCells(neg._sel.)30.1
CD33+_Myeloid16.4
CD34+16.05
CD4+_Tcells19.3
CD56+_NKCells14.55
CD71+_EarlyErythroid13.9
CD8+_Tcells31.85
CardiacMyocytes19.25
Caudatenucleus12.25
Cerebellum12
CerebellumPeduncles17.25
CiliaryGanglion10.65
CingulateCortex15.25
Colorectaladenocarcinoma455.4
DorsalRootGanglion11.45
FetalThyroid38.15
Fetalbrain12.85
Fetalliver59
Fetallung58.4
GlobusPallidus11
Heart22.25
Hypothalamus16.95
Kidney12.9
Leukemia_chronicMyelogenousK-56287.3
Leukemia_promyelocytic-HL-6012.9
Leukemialymphoblastic(MOLT-4)11.9
Liver908.2
Lung128.05
Lymphnode24.15
Lymphoma_burkitts(Daudi)18.75
Lymphoma_burkitts(Raji)30.7
MedullaOblongata13.9
OccipitalLobe13.3
OlfactoryBulb11.75
Ovary10.3
Pancreas174.05
PancreaticIslet124.1
ParietalLobe16.3
Pituitary18.2
Placenta215.35
Pons15.65
PrefrontalCortex17.8
Prostate254.25
Salivarygland25.05
SkeletalMuscle20.55
Skin14.65
SmoothMuscle16.55
Spinalcord15.65
SubthalamicNucleus14.1
SuperiorCervicalGanglion17.6
TemporalLobe14.55
Testis36.95
TestisGermCell32.45
TestisIntersitial14.6
TestisLeydigCell15.4
TestisSeminiferousTubule19.4
Thalamus15.15
Thymus12
Thyroid133.85
Tongue26.85
Tonsil18.4
Trachea37.45
TrigeminalGanglion18.4
Uterus12.2
UterusCorpus16.2
WholeBlood17.1
Wholebrain12.75
colon108.85
pineal_day17.74
pineal_night16.78
retina117.575
small_intestine31.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10302_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.05 ± 0.77
Basal Forebrain3.14 ± 0.83
Basal Part of Pons2.86 ± 0.57
Cerebellar Cortex3.36 ± 0.51
Cerebellar Nuclei3.14 ± 0.39
Claustrum3.3 ± 0.6
Epithalamus2.67 ± 0.66
Frontal Lobe2.99 ± 0.69
Globus Pallidus2.81 ± 0.75
Hypothalamus2.86 ± 0.37
Insula2.91 ± 0.76
Limbic Lobe2.99 ± 0.68
Mesencephalon3.11 ± 0.68
Myelencephalon3.07 ± 0.66
Occipital Lobe3.3 ± 0.69
Parietal Lobe3 ± 0.6
Pontine Tegmentum2.98 ± 0.6
Striatum3.17 ± 0.65
Subthalamus2.85 ± 0.65
Temporal Lobe2.93 ± 0.65
Thalamus3.21 ± 0.71
White Matter2.74 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
LsrCBCerebellum8.56
12.09
LsrCTXCerebral cortex28.06
21.69
LsrHIPHippocampal region12.2
13.46
LsrHPFHippocampal formation13.54
12.79
LsrHYHypothalamus0.89
0.77
LsrLSXLateral septal complex2.26
1.54
LsrMBMidbrain5.69
6.12
LsrMYMedulla1.54
1.45
LsrOLFOlfactory bulb23.48
18.29
LsrPPons1.56
1.98
LsrPALPallidum1.93
1.54
LsrRHPRetrohippocampal region16.12
12.07
LsrsAMYStriatum-like amygdalar nuclei6.28
4.65
LsrSTRStriatum2.95
2.51
LsrSTRdStriatum dorsal region2.27
2.21
LsrSTRvStriatum ventral region3.88
2.76
LsrTHThalamus3.29
2.48
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000594 14 411 424 AMSEVTSLHEDDWR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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