Annotation Detail for NOP58
Basic Information Top
| Gene Symbol: | NOP58 ( NOP5,NOP5/NOP58 ) |
|---|---|
| Gene Full Name: | NOP58 ribonucleoprotein homolog (yeast) |
| Band: | 2q33.1 |
| Quick Links | Entrez ID:51602; OMIM: NA; Uniprot ID:NOP58_HUMAN; ENSEMBL ID: ENSG00000055044; HGNC ID: 29926 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.471104
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 11 / 62319 | 176 | |
| fetus | 29 / 564012 | 51 | |
| neonate | 0 / 31097 | 0 | |
| infant | 4 / 23620 | 169 | |
| juvenile | 2 / 55556 | 35 |  |
| adult | 111 / 1939121 | 57 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 13 / 95842 | 135 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 148 / 3360307 | 44 | |
| ovarian tumor | 8 / 76682 | 104 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 9 / 125680 | 71 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 8 / 46356 | 172 | |
| skin tumor | 19 / 124949 | 152 | |
| soft tissue/muscle tissue tumor | 16 / 125191 | 127 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 16 / 123478 | 129 | |
| bone | 12 / 71655 | 167 | |
| bone marrow | 10 / 48801 | 204 |  |
| brain | 40 / 1100989 | 36 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 30 / 215722 | 139 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 12 / 211054 | 56 | |
| heart | 2 / 89626 | 22 | |
| intestine | 15 / 234472 | 63 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 0 / 24145 | 0 | |
| liver | 11 / 207743 | 52 | |
| lung | 21 / 336974 | 62 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 23 / 210574 | 109 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 3 / 330442 | 9 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 5 / 16999 | 294 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_9620_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.04 ± 0.36 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.65 ± 0.26 | |
| Basal Part of Pons | 5.78 ± 0.38 | |
| Cerebellar Cortex | 5.93 ± 0.39 | |
| Cerebellar Nuclei | 5.47 ± 0.35 | |
| Claustrum | 6 ± 0.31 | |
| Epithalamus | 5.6 ± 0.51 | |
| Frontal Lobe | 5.73 ± 0.43 | |
| Globus Pallidus | 5.58 ± 0.49 | |
| Hypothalamus | 5.58 ± 0.36 | |
| Insula | 5.77 ± 0.38 | |
| Limbic Lobe | 5.92 ± 0.4 | |
| Mesencephalon | 5.77 ± 0.37 | |
| Myelencephalon | 5.72 ± 0.42 | |
| Occipital Lobe | 5.97 ± 0.42 | |
| Parietal Lobe | 5.76 ± 0.41 | |
| Pontine Tegmentum | 5.7 ± 0.42 | |
| Striatum | 5.69 ± 0.57 | |
| Subthalamus | 5.78 ± 0.16 | |
| Temporal Lobe | 5.71 ± 0.41 | |
| Thalamus | 5.66 ± 0.37 | |
| White Matter | 5.69 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nol5 | CB | Cerebellum | 18.55 | |
| 22.16 | | |||
| Nol5 | CTX | Cerebral cortex | 30.35 | |
| 22.93 | | |||
| Nol5 | HIP | Hippocampal region | 33.59 | |
| 55.15 | | |||
| Nol5 | HPF | Hippocampal formation | 28.36 | |
| 37.68 | | |||
| Nol5 | HY | Hypothalamus | 12.66 | |
| 9.97 | | |||
| Nol5 | LSX | Lateral septal complex | 16.7 | |
| 12.1 | | |||
| Nol5 | MB | Midbrain | 15.57 | |
| 13.7 | | |||
| Nol5 | MY | Medulla | 17.01 | |
| 16.3 | | |||
| Nol5 | OLF | Olfactory bulb | 19.25 | |
| 15.56 | | |||
| Nol5 | P | Pons | 10.07 | |
| 9.66 | | |||
| Nol5 | PAL | Pallidum | 9.81 | |
| 8.43 | | |||
| Nol5 | RHP | Retrohippocampal region | 20.2 | |
| 16.17 | | |||
| Nol5 | sAMY | Striatum-like amygdalar nuclei | 8.03 | |
| 5.76 | | |||
| Nol5 | STR | Striatum | 8.4 | |
| 6.18 | | |||
| Nol5 | STRd | Striatum dorsal region | 7.1 | |
| 5.5 | | |||
| Nol5 | STRv | Striatum ventral region | 10.03 | |
| 6.55 | | |||
| Nol5 | TH | Thalamus | 9.75 | |
| 8.48 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| NOP58_HUMAN_279 | 19 | 279 | 297 | MMAIAPNVTVMVGELVGAR | PRIDE |
| NOP58_HUMAN_495 | 23 | 495 | 517 | HIKEEPLSEEEPCTSTAIASPEK | PRIDE |
| PAp00002107 | 18 | 100 | 117 | EKLNLSCIHSPVVNELMR | Peptide Atlas |